CuGenDBv2

Gene ID	Lag0030986
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	chr11:3575919..3580572
RNA-Seq Expression	Lag0030986
Synteny	Lag0030986
Gene Ontology terms	GO:0010270 - photosystem II oxygen evolving complex assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019734 - Tetratricopeptide repeat IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152258.2 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

9.7e-223

91.18

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H L +LSNPKS TILRPRLP+       SQR F LSI+ CSSTSQSPEAN++SAESCVN GLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPG
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_008454363.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo]

3.5e-225

91.38

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN++SAESCVNLGLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_022143429.1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]

3.1e-229

92.06

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MA+ +LPLYH LL  SNPKS+T LRPRLP+ST   FN  +NFHLSI +CSSTSQSPEANVE+AESCVNLGLQLFSKGRVKEALVQF+AALN++PNP+EAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLFT+PRLFRAIQGGDEAPDVWETAGNLAVN GGI+VLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPVVWGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_022983449.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]

1.8e-221

90.5

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        + M +LP++HQLL+LSNPKS TILR RLP+S     NSQR FH+SI+ CSSTSQSPE NVESAES VNLGLQLFSKGRVKEALVQFEAAL+MNPNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF LPRLFRAIQGG+EAPDVWET GNLAVN GGIVV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVL+VPV+W EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPG
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

XP_038905239.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

1.1e-221

90.93

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H LL+ S+PKS TILRPR       L  SQR FH+SI+  SSTSQSPEAN+ESAESCVNLGLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FF VALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGIVV VALFLWDNKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAPAT AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSE VTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT96 TPR_REGION domain-containing protein

4.7e-223

91.18

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H L +LSNPKS TILRPRLP+       SQR F LSI+ CSSTSQSPEAN++SAESCVN GLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAP T AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPG
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPAT-AAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A1S3BYE8 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.7e-225

91.38

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN++SAESCVNLGLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A5A7TR76 Protein LOW PSII ACCUMULATION 1

1.7e-225

91.38

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MAM +LPL+H L +LSNPKS TILRPRLP+       SQR FHLSI+ CSSTSQSPEAN++SAESCVNLGLQLFSKGRVKEALVQFEAALNM+PNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF +PRLFRAIQGGD APDVWETAGNLAVN GGI+V VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPV+WGEGREPQIEKKGFGAPA AA ALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGR+RRSGRGMPDW KIIEELPPMEALLSKLE+
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1CPA1 protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1

1.5e-229

92.06

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        MA+ +LPLYH LL  SNPKS+T LRPRLP+ST   FN  +NFHLSI +CSSTSQSPEANVE+AESCVNLGLQLFSKGRVKEALVQF+AALN++PNP+EAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AA YNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLFT+PRLFRAIQGGDEAPDVWETAGNLAVN GGI+VLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE
        AIQKAERFRTELLRRGVL+VPVVWGEGREPQIEK+GFGAP  A A LPSIGEDFEKRAQSITAKSKLKAEIRFRAEV+SPAEWESWIRDQQKSEGVTPGE
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGE

Query:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
Subjt:  DVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

A0A6J1J7F4 protein LOW PSII ACCUMULATION 1, chloroplastic

8.8e-222

90.5

Show/hide

Query:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ
        + M +LP++HQLL+LSNPKS TILR RLP+S     NSQR FH+SI+ CSSTSQSPE NVESAES VNLGLQLFSKGRVKEALVQFEAAL+MNPNPMEAQ
Subjt:  MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQ

Query:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG
        AALYNKACCHAYRGEGKKAADCLR+ALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAPFRGVR+FFYVALSAAAG
Subjt:  AALYNKACCHAYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAG

Query:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS
        ISLLF LPRLFRAIQGG+EAPDVWET GNLAVN GGIVV VALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSS
Subjt:  ISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSS

Query:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG
        AIQKAERFRTELLRRGVL+VPV+W EGREP++EKKGFGAPA A +AALPSIGEDFEKRAQSITAKSKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPG
Subjt:  AIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATA-AAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPG

Query:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER
        EDVYIILRLDGRVRRSGRGMPDW KIIEELPPM+ALLSKLER
Subjt:  EDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLER

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

4.0e-179

73.71

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Query:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVES---------AESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQAALYNKACCHAYRGE
        RP LP   +TLFNS+RN+   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGE
Subjt:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVES---------AESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQAALYNKACCHAYRGE

Query:  GKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ
        GKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ FT+PRL +AI+
Subjt:  GKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ

Query:  GGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR
        GGD AP++ ET GN A+N GGIVV+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRR
Subjt:  GGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR

Query:  GVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS
        GVL+VPVVWGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRS
Subjt:  GVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS

Query:  GRGMPDWPKIIEELPPMEALLSKLER
        GRGMPDW +I +ELPPM+ +LSKLER
Subjt:  GRGMPDWPKIIEELPPMEALLSKLER

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

2.8e-180

73.71

Show/hide

Query:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVES---------AESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQAALYNKACCHAYRGE
        RP LP   +TLFNS+RN+   +   +S+S SP ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKACCHAYRGE
Subjt:  RPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVES---------AESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQAALYNKACCHAYRGE

Query:  GKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ
        GKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ FT+PRL +AI+
Subjt:  GKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQ

Query:  GGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR
        GGD AP++ ET GN A+N GGIVV+V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRR
Subjt:  GGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRR

Query:  GVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS
        GVL+VPVVWGE + P+IEKKGFGA + AA +LPSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIRDQQ SEGV PG+DVYIILRLDGRVRRS
Subjt:  GVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRS

Query:  GRGMPDWPKIIEELPPMEALLSKLER
        GRGMPDW +I +ELPPM+ +LSKLER
Subjt:  GRGMPDWPKIIEELPPMEALLSKLER

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

3.4e-32

31.34

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Query:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-
        D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V+ G   +   L+  +NK +  Q+A++SR E L +L +R+ 
Subjt:  DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDEAPDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRL-

Query:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI
          N+++ +  LR   R VI AG  E +  A ++++ +   L+ RGV+VV     +G  P +E   F     A        E+  +R + +          
Subjt:  STNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLVVPVVWGEGREPQIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEI

Query:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL
         +R   +   EWE W+ +Q+K   V+    VY+ LRLDGRVR SG G P W   + +LPP++ + + L
Subjt:  RFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGGTTTCTCTTCCTCTGTACCACCAGCTGCTCAGCCTCTCAAACCCCAAATCAAAAACCATTCTCAGGCCGCGGCTACCGAGCTCCACATCCACCCTCTTCAA
CTCCCAAAGGAATTTCCATCTCTCTATTGTGTATTGCTCTTCCACTTCTCAGTCCCCTGAAGCTAATGTCGAATCTGCAGAGTCCTGCGTCAATCTCGGCCTCCAGCTCT
TTTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCATTGAATATGAATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGTTGTCAT
GCCTATCGTGGGGAAGGGAAGAAAGCTGCTGACTGTCTGCGTCTTGCATTAAGAGAATATAACCTGAAGTTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAG
AGCCCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATAGGTGGAGAGGATATAGGATATGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCACCTT
TTCGTGGGGTGCGGAAATTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATATCGTTGTTGTTTACTCTACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGAAGCT
CCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATTTTGGAGGTATTGTTGTTCTTGTGGCATTGTTCTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACA
AATTTCAAGAAATGAAACATTATCGAGGTTGCCTCTTCGTCTTTCTACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGA
AAAAGGAGACAGTTTCTTCAGCCATCCAAAAAGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGCGTTCTCGTAGTTCCTGTCGTATGGGGCGAAGGGAGGGAACCC
CAAATAGAAAAGAAAGGGTTTGGTGCTCCAGCCACTGCAGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTT
GAAAGCCGAAATTCGATTCAGGGCTGAGGTTATATCACCAGCAGAATGGGAAAGTTGGATAAGGGACCAGCAGAAGTCTGAAGGGGTTACTCCTGGGGAGGATGTCTACA
TTATATTGCGATTGGACGGTCGAGTTCGAAGATCAGGGAGAGGGATGCCTGACTGGCCAAAAATTATTGAAGAGCTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAA
AGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAMVSLPLYHQLLSLSNPKSKTILRPRLPSSTSTLFNSQRNFHLSIVYCSSTSQSPEANVESAESCVNLGLQLFSKGRVKEALVQFEAALNMNPNPMEAQAALYNKACCH
AYRGEGKKAADCLRLALREYNLKFGTILNDPDLASFRALPEFKELQEEARIGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFTLPRLFRAIQGGDEA
PDVWETAGNLAVNFGGIVVLVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLVVPVVWGEGREP
QIEKKGFGAPATAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWPKIIEELPPMEALLSKLE
R

Lag0030986 (gene) of Sponge gourd (AG-4) v1 genome