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Lag0030994 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030994
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr11:3655793..3657555
RNA-Seq ExpressionLag0030994
SyntenyLag0030994
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR017956 - AT hook, DNA-binding motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ROP23230.1 hypothetical protein EDB33_103336 [Vibrio crassostreae]5.9e-0428.33Show/hide
Query:  HDGAYTLPGKSLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPR
        ++ A+ L       P     L +S H +P  A++L       P    SL +S H +P  A++LL      P    SL +S HS+P  A+         P 
Subjt:  HDGAYTLPGKSLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPR

Query:  KFPSLSSSCHSHPRGVRTLF
           SL +S +S+P     LF
Subjt:  KFPSLSSSCHSHPRGVRTLF

ROR26620.1 hypothetical protein EDB67_10236 [Vibrio crassostreae]7.7e-0429.2Show/hide
Query:  HDGAYTLPGKSLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPR
        ++ A+ L       P     L +S H +P  A++LL      P    +L SS H +P  A++LL      P    SL +S +S+P  A++ +      P 
Subjt:  HDGAYTLPGKSLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPR

Query:  KFPSLSSSCHSHP
           +L SS HS+P
Subjt:  KFPSLSSSCHSHP

RUS79541.1 hypothetical protein EGW08_012709, partial [Elysia chlorotica]7.5e-0737.5Show/hide
Query:  SLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPRKFPSLSSSCH
        S G PR+F  L S   G PR        S G+PR+FP  +S   G PR   +    S G PR+FPS +SS     R   +    S G PR+FP  +S   
Subjt:  SLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPRKFPSLSSSCH

Query:  SHPR
          PR
Subjt:  SHPR

TrEMBL top hitse value%identityAlignment
A0A3S0ZP94 Uncharacterized protein (Fragment)3.6e-0737.5Show/hide
Query:  SLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPRKFPSLSSSCH
        S G PR+F  L S   G PR        S G+PR+FP  +S   G PR   +    S G PR+FPS +SS     R   +    S G PR+FP  +S   
Subjt:  SLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPRKFPSLSSSCH

Query:  SHPR
          PR
Subjt:  SHPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGTTGGGATGTTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAGAGCTTGGGGAGGCCTAGGAAGTTCCTAGGCCTCTGTTCAAGCTGTCACGGTCA
TCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGTTTGGGGATGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCATACACTCTTCTGG
GGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTTTTATGGGGAAAAGCTTGGGGAGGCCCAGGAAA
TTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCTAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGT
CACAGTCATCCCAGGGGTGCGTACACTCTTCTGGAGAAAAGCTTGGGGAGGCCCAGAAAATTCTCGAGCCTCTCTTCAAGCTATCATGGTTATCCCAGGGGTGCGTACAC
TCTTCTGGGGAAAAGCTTGGGGAGGCCCAGAAAATTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGC
CCAGGAAATTCCCGAGCCTCTCTTCAAGCTACAGATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTC
AAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAAGCCGAGGAAATTCCTGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTG
CGTACACTCAGTTGGGGGAAGTGCGGAAGTCTTGCCTCTACAAAGATCATTCCCGTCTGGCCACACGCGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGGCCTCGGCCT
TGGTATGAGGCCGACCAGCTCCTCTGTGCTGTTCGTTTGCTTGTTTTCATCCCAAGGGTGCATGCACTTAGTCGGAGAAAACTTGGGGAGGTCGAGGAAATTTCGAGCCT
CTCTTCAAGCTGTTGTATTCATCCCAGGGGTGCATACACTCTGTTGGGGACCCCAGGAGAGAAAGCCATTGTTCCTGGTCGGCCTCGGCCTCCTTTGGTCGGCCTCGGCC
TTCCTGCAGTGGTGGCGTTGCCTGCCACTTGTTTCTGCTATGGCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGTTGGGATGTTTGGCCTTGGCATGACGGTGCGTACACTCTTCCGGGGAAGAGCTTGGGGAGGCCTAGGAAGTTCCTAGGCCTCTGTTCAAGCTGTCACGGTCA
TCCCAGAGGTGCGTACACTCTTCTGGGGAAAAGTTTGGGGATGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCACGGTCATCCCAGGGGTGCATACACTCTTCTGG
GGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTTTTATGGGGAAAAGCTTGGGGAGGCCCAGGAAA
TTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCTAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGT
CACAGTCATCCCAGGGGTGCGTACACTCTTCTGGAGAAAAGCTTGGGGAGGCCCAGAAAATTCTCGAGCCTCTCTTCAAGCTATCATGGTTATCCCAGGGGTGCGTACAC
TCTTCTGGGGAAAAGCTTGGGGAGGCCCAGAAAATTCCCGAGCCTCTCTTCAAGCTGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGC
CCAGGAAATTCCCGAGCCTCTCTTCAAGCTACAGATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTC
AAGCTGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAAGCCGAGGAAATTCCTGAGCCTCTCTTCAAGCTGCTGTATTCATCCCGAGGGTG
CGTACACTCAGTTGGGGGAAGTGCGGAAGTCTTGCCTCTACAAAGATCATTCCCGTCTGGCCACACGCGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGGCCTCGGCCT
TGGTATGAGGCCGACCAGCTCCTCTGTGCTGTTCGTTTGCTTGTTTTCATCCCAAGGGTGCATGCACTTAGTCGGAGAAAACTTGGGGAGGTCGAGGAAATTTCGAGCCT
CTCTTCAAGCTGTTGTATTCATCCCAGGGGTGCATACACTCTGTTGGGGACCCCAGGAGAGAAAGCCATTGTTCCTGGTCGGCCTCGGCCTCCTTTGGTCGGCCTCGGCC
TTCCTGCAGTGGTGGCGTTGCCTGCCACTTGTTTCTGCTATGGCTACTGA
Protein sequenceShow/hide protein sequence
MQSWDVWPWHDGAYTLPGKSLGRPRKFLGLCSSCHGHPRGAYTLLGKSLGMPRKFPSLSSSCHGHPRGAYTLLGKSLGRPRKFPSLSSSCHSHPRGAYTFMGKSLGRPRK
FPSLSSSCHSHPRGVRTLFWGKAWGGLGNSRASLQAVTVIPGVRTLFWRKAWGGPENSRASLQAIMVIPGVRTLFWGKAWGGPENSRASLQAVIVIPGVRTLFWGKAWGG
PGNSRASLQATDSHPRGAYTLLGKSLGRPRKFPSLSSSCHGHPRGAYTLLGKSLGKPRKFLSLSSSCCIHPEGAYTQLGEVRKSCLYKDHSRLATRGGARPWPLDGRPRP
WYEADQLLCAVRLLVFIPRVHALSRRKLGEVEEISSLSSSCCIHPRGAYTLLGTPGEKAIVPGRPRPPLVGLGLPAVVALPATCFCYGY