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Lag0031147 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031147
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB11-like protein
Genome locationchr11:5282247..5286668
RNA-Seq ExpressionLag0031147
SyntenyLag0031147
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0001055 - RNA polymerase II activity (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR036603 - RNA polymerase, RBP11-like subunit
IPR037685 - RNA polymerase RBP11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036589.1 Peptidyl-prolyl cis-trans isomerase FKBP42 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-5683.33Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSIMDDAGGIGLSSLSSQGTIDFALGKLGGALFK
        LRN FE      ++    G  LS  SSQGT D AL K GGA  K
Subjt:  LRNAFEVDSMGSIMDDAGGIGLSSLSSQGTIDFALGKLGGALFK

RYR22165.1 hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea]1.6e-5292.92Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSI
        L+NAFEV   G +
Subjt:  LRNAFEVDSMGSI

RYR69425.1 hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea]1.6e-5292.92Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSI
        L+NAFEV   G +
Subjt:  LRNAFEVDSMGSI

XP_008461807.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]1.6e-5297.22Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVD
        L+NAFE +
Subjt:  LRNAFEVD

XP_011651771.1 DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus]1.6e-5297.22Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVD
        L+NAFE +
Subjt:  LRNAFEVD

TrEMBL top hitse value%identityAlignment
A0A0A0LCD5 RNA_pol_L_2 domain-containing protein8.0e-5397.22Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVD
        L+NAFE +
Subjt:  LRNAFEVD

A0A445A731 RNA_pol_L_2 domain-containing protein8.0e-5392.92Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSI
        L+NAFEV   G +
Subjt:  LRNAFEVDSMGSI

A0A445A743 RNA_pol_L_2 domain-containing protein8.0e-5392.92Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSI
        L+NAFEV   G +
Subjt:  LRNAFEVDSMGSI

A0A445E1Q7 RNA_pol_L_2 domain-containing protein8.0e-5392.92Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSI
        L+NAFEV   G +
Subjt:  LRNAFEVDSMGSI

A0A5B6UAS6 DNA-directed RNA polymerases II, IV and V subunit 118.0e-5391.23Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDRYERFVVPEGTKKVSYERDTKIINAA+FTIERE+HTIGNILRMQLHRDENVLFAGYKLPHPLQYKI+VRIHTTSQSSPMQAYNQAINDLDKELDH
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSIM
        L+NAFEV  + S++
Subjt:  LRNAFEVDSMGSIM

SwissProt top hitse value%identityAlignment
O08740 DNA-directed RNA polymerase II subunit RPB115.5e-2750Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSIMDDAGGI
        L   F     G+I D   GI
Subjt:  LRNAFEVDSMGSIMDDAGGI

P52435 DNA-directed RNA polymerase II subunit RPB11-a7.2e-2750Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSIMDDAGGI
        L   F V    +I D   GI
Subjt:  LRNAFEVDSMGSIMDDAGGI

Q32P79 DNA-directed RNA polymerase II subunit RPB117.2e-2750Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAGYK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVDSMGSIMDDAGGI
        L   F V    +I D   GI
Subjt:  LRNAFEVDSMGSIMDDAGGI

Q38859 DNA-directed RNA polymerases II, IV and V subunit 111.4e-5188.89Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVD
        L+N FE +
Subjt:  LRNAFEVD

Q86JJ5 DNA-directed RNA polymerase II subunit rpb114.2e-2749.52Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAGY++PHPL++ + +RI T + ++P++   +++  L +E   
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAF
        L N+F
Subjt:  LRNAF

Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit4.5e-0831.65Show/hide
Query:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE
        ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +  A  +L +   H+R+ F+
Subjt:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE

AT2G29540.2 RNApolymerase 14 kDa subunit4.5e-0831.65Show/hide
Query:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE
        ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +  A  +L +   H+R+ F+
Subjt:  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFE

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like1.0e-5288.89Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDH

Query:  LRNAFEVD
        L+N FE +
Subjt:  LRNAFEVD

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like5.8e-4869.57Show/hide
Query:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR--------------------------
        MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAGY+LPHPL+YKIIVR                          
Subjt:  MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVR--------------------------

Query:  ----IHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVD
            IHTTSQSSPMQAYNQAINDLDKELD+L+N FE +
Subjt:  ----IHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCCCCGACCGATACGAGCGATTCGTCGTCCCAGAAGGGACCAAAAAAGTCTCATACGAGAGAGACACGAAGATCATAAATGCGGCGTCGTTCACCATTGAAAG
AGAGGAACATACCATTGGAAACATCTTGCGCATGCAGCTGCATCGAGACGAGAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCCTGCAGTACAAAATCATTGTCC
GGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCGTATAATCAAGCCATTAATGATCTGGACAAGGAGCTTGATCATTTGAGAAATGCATTTGAGGTCGACTCGATG
GGGTCTATAATGGATGACGCTGGAGGGATCGGGCTGAGTTCGCTAAGTTCTCAAGGGACTATTGATTTTGCTTTGGGAAAACTTGGTGGAGCTCTGTTCAAGAAGCAGAG
ACAAGACAATGGTTTGCTGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCCCCCGACCGATACGAGCGATTCGTCGTCCCAGAAGGGACCAAAAAAGTCTCATACGAGAGAGACACGAAGATCATAAATGCGGCGTCGTTCACCATTGAAAG
AGAGGAACATACCATTGGAAACATCTTGCGCATGCAGCTGCATCGAGACGAGAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCCTGCAGTACAAAATCATTGTCC
GGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCGTATAATCAAGCCATTAATGATCTGGACAAGGAGCTTGATCATTTGAGAAATGCATTTGAGGTCGACTCGATG
GGGTCTATAATGGATGACGCTGGAGGGATCGGGCTGAGTTCGCTAAGTTCTCAAGGGACTATTGATTTTGCTTTGGGAAAACTTGGTGGAGCTCTGTTCAAGAAGCAGAG
ACAAGACAATGGTTTGCTGACATGA
Protein sequenceShow/hide protein sequence
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSM
GSIMDDAGGIGLSSLSSQGTIDFALGKLGGALFKKQRQDNGLLT