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Lag0031173 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031173
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:5515485..5515916
RNA-Seq ExpressionLag0031173
SyntenyLag0031173
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
HHI15973.1 ribonuclease HI family protein [Candidatus Woesearchaeota archaeon]5.9e-0439.53Show/hide
Query:  EVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSE-VHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ
        E  AIIQA+R  ++L    VE+ SDS  AI+ ING  +  SE +     +++ + K F S  F +  R  NS  D L KIA++NS+
Subjt:  EVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSE-VHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ

MBA0729380.1 hypothetical protein [Gossypium laxum]7.7e-0434.44Show/hide
Query:  SSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ
        SS A E YA + A++L I +  H V +  DSCT IK    +      +   IS IQ+  + F  + F +I R  NS    + K ALR  +
Subjt:  SSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ

TrEMBL top hitse value%identityAlignment
A0A0D2M3V7 RNase H domain-containing protein8.3e-0431.13Show/hide
Query:  ILCAMENYEHRTLSS-LATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIAL
        +L A++   HR +SS LA E +  ++ ++L I L +H ++L  DS T IK         S +   I  IQ+   +F  L F YI R  N     + KIA 
Subjt:  ILCAMENYEHRTLSS-LATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIAL

Query:  RNSQSV
           +++
Subjt:  RNSQSV

A0A3P6E882 RNase H domain-containing protein (Fragment)6.3e-0433.33Show/hide
Query:  HRTLSSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQSV
        H   S LA E  A+  A++    LNV  +++ SD+ T I+ IN +   D E++  +  I+     F+ L+F Y+ R  N Q +AL K  LRN  ++
Subjt:  HRTLSSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQSV

A0A7C5K1Q1 Ribonuclease HI family protein2.8e-0439.53Show/hide
Query:  EVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSE-VHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ
        E  AIIQA+R  ++L    VE+ SDS  AI+ ING  +  SE +     +++ + K F S  F +  R  NS  D L KIA++NS+
Subjt:  EVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSE-VHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ

A0A7J9AZD2 RNase H domain-containing protein3.7e-0434.44Show/hide
Query:  SSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ
        SS A E YA + A++L I +  H V +  DSCT IK    +      +   IS IQ+  + F  + F +I R  NS    + K ALR  +
Subjt:  SSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRNSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTTTCGGGTGCAACGATTCGTATTCTATGTGCTATGGAAAATTATGAGCACCGCACTCTATCATCATTGGCGACTGAGGTCTATGCAATTATCCAAGCAATAAG
GCTTCTTATTCGATTGAATGTTCATGAGGTTGAGTTACATTCAGATTCTTGTACTGCTATCAAAATGATCAATGGTGAGCCGGAAACAGATTCAGAAGTGCACCATTGGA
TATCCCAGATTCAGAAAATGGACAAGGAGTTTATTTCATTGAACTTTAATTATATCAGAAGATATAGGAATTCCCAGCCGGACGCTTTGGTTAAAATAGCACTTCGCAAT
TCACAATCTGTGCTATGGATCTCTGACTTTTCTGATTGGTTAAAATCAATGGGACAAAATGCCCATTGTAAATGCATTACGTCTTGCTCTTGCAAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTTTCGGGTGCAACGATTCGTATTCTATGTGCTATGGAAAATTATGAGCACCGCACTCTATCATCATTGGCGACTGAGGTCTATGCAATTATCCAAGCAATAAG
GCTTCTTATTCGATTGAATGTTCATGAGGTTGAGTTACATTCAGATTCTTGTACTGCTATCAAAATGATCAATGGTGAGCCGGAAACAGATTCAGAAGTGCACCATTGGA
TATCCCAGATTCAGAAAATGGACAAGGAGTTTATTTCATTGAACTTTAATTATATCAGAAGATATAGGAATTCCCAGCCGGACGCTTTGGTTAAAATAGCACTTCGCAAT
TCACAATCTGTGCTATGGATCTCTGACTTTTCTGATTGGTTAAAATCAATGGGACAAAATGCCCATTGTAAATGCATTACGTCTTGCTCTTGCAAATTTTAA
Protein sequenceShow/hide protein sequence
MAFSGATIRILCAMENYEHRTLSSLATEVYAIIQAIRLLIRLNVHEVELHSDSCTAIKMINGEPETDSEVHHWISQIQKMDKEFISLNFNYIRRYRNSQPDALVKIALRN
SQSVLWISDFSDWLKSMGQNAHCKCITSCSCKF