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Lag0031197 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031197
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:5705533..5706766
RNA-Seq ExpressionLag0031197
SyntenyLag0031197
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]1.7e-1134.59Show/hide
Query:  KAYLNSQP-PEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEV
        K  +N  P P +V++  +   W+K    VLK+N DAAW  +  +GG+GWVV DS+G ++ AG     R  S  A+EA+AI + L   + +   K   +EV
Subjt:  KAYLNSQP-PEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEV

Query:  ETDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV
        E+DS++V++++ G+ N D++V  +I      L  +     F +  R  N  AH +A FV
Subjt:  ETDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV

CAB4279811.1 unnamed protein product [Prunus armeniaca]7.7e-1234.18Show/hide
Query:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE
        K  +N  P        +   W+KL   VLK+N DAAW  +  +GG+GWVV DS G ++ AG     R  S  A+EAKAI + L   + +   K   +EVE
Subjt:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE

Query:  TDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV
        +DS++++++L G+ N D++V ++I      L  +     F +  R  N  AH +  FV
Subjt:  TDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV

VDD35472.1 unnamed protein product, partial [Brassica oleracea]2.4e-1330.63Show/hide
Query:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE
        +A +  Q  ++  +    V W+   +  LK NTDAAW ++E  GG GW++ D  G LI AG  K+    S    EA+A+W  L+ +      +   +++E
Subjt:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE

Query:  TDSMEVVKVLTGDNEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNF
        TDS+++++++ G+ E   +L+ I +  + L S   EI   +Y R  N  A  +AR    F
Subjt:  TDSMEVVKVLTGDNEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNF

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.5e-1134.03Show/hide
Query:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVETDSMEVVKVLTGDNEDLSVL
        WK    N  KLNT+AAW      GGIGW++ D  G +I A    I  + +I  LE  AI +GL  I     +   PI +E+DS+E + +L    +D + +
Subjt:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVETDSMEVVKVLTGDNEDLSVL

Query:  KSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE
          + E    +   +  +  RH  RE N VAH +AR     D  E
Subjt:  KSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.3e-1134.23Show/hide
Query:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGL-----EKIIPTCSQKDMPIEVETDSMEVVKVLTGDNE
        WK    N  KLNTDAAW      GGIGW++ D  G +I A    I  + +I  LE  AI +GL     E   P   +   PI +E+DS+E + +L    +
Subjt:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGL-----EKIIPTCSQKDMPIEVETDSMEVVKVLTGDNE

Query:  DLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE
        D + +  + E    +   +  +  RH  RE N VAH +AR     D  E
Subjt:  DLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE

TrEMBL top hitse value%identityAlignment
A0A3P6ESY2 RNase H domain-containing protein (Fragment)1.2e-1330.63Show/hide
Query:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE
        +A +  Q  ++  +    V W+   +  LK NTDAAW ++E  GG GW++ D  G LI AG  K+    S    EA+A+W  L+ +      +   +++E
Subjt:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE

Query:  TDSMEVVKVLTGDNEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNF
        TDS+++++++ G+ E   +L+ I +  + L S   EI   +Y R  N  A  +AR    F
Subjt:  TDSMEVVKVLTGDNEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNF

A0A6J1CP26 uncharacterized protein LOC1110134123.1e-1134.03Show/hide
Query:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVETDSMEVVKVLTGDNEDLSVL
        WK    N  KLNT+AAW      GGIGW++ D  G +I A    I  + +I  LE  AI +GL  I     +   PI +E+DS+E + +L    +D + +
Subjt:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVETDSMEVVKVLTGDNEDLSVL

Query:  KSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE
          + E    +   +  +  RH  RE N VAH +AR     D  E
Subjt:  KSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE

A0A6J1DSV1 uncharacterized protein LOC1110236086.3e-1234.23Show/hide
Query:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGL-----EKIIPTCSQKDMPIEVETDSMEVVKVLTGDNE
        WK    N  KLNTDAAW      GGIGW++ D  G +I A    I  + +I  LE  AI +GL     E   P   +   PI +E+DS+E + +L    +
Subjt:  WKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGL-----EKIIPTCSQKDMPIEVETDSMEVVKVLTGDNE

Query:  DLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE
        D + +  + E    +   +  +  RH  RE N VAH +AR     D  E
Subjt:  DLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNE

A0A6J5UAY2 Reverse transcriptase domain-containing protein8.3e-1234.59Show/hide
Query:  KAYLNSQP-PEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEV
        K  +N  P P +V++  +   W+K    VLK+N DAAW  +  +GG+GWVV DS+G ++ AG     R  S  A+EA+AI + L   + +   K   +EV
Subjt:  KAYLNSQP-PEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEV

Query:  ETDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV
        E+DS++V++++ G+ N D++V  +I      L  +     F +  R  N  AH +A FV
Subjt:  ETDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV

A0A6J5UV01 Reverse transcriptase domain-containing protein3.7e-1234.18Show/hide
Query:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE
        K  +N  P        +   W+KL   VLK+N DAAW  +  +GG+GWVV DS G ++ AG     R  S  A+EAKAI + L   + +   K   +EVE
Subjt:  KAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQKDMPIEVE

Query:  TDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV
        +DS++++++L G+ N D++V ++I      L  +     F +  R  N  AH +  FV
Subjt:  TDSMEVVKVLTGD-NEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.8e-0438Show/hide
Query:  VRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAG
        VR   +H  W++ E+  +K N D ++   +     GWVV DSNGS + AG
Subjt:  VRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAG

AT1G52990.1 thioredoxin family protein4.8e-0433.96Show/hide
Query:  LKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKA-IW
        +K N DA+  E + + G+GW++ +S G+++  GMGK + + + +  E  A IW
Subjt:  LKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKA-IW

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0521.97Show/hide
Query:  LEVRPVKEVLFKAYLNSQPPEKVRSHAS-HVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIP
        + +   KE L     N Q      +  S +  W    ++ LK N DA+  E+  + G+GW++ +S G++I  GMGK + + + +  E   +   ++    
Subjt:  LEVRPVKEVLFKAYLNSQPPEKVRSHAS-HVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIP

Query:  TCSQKDMPIEVETDSMEVVKVLTGDNED------LSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVAR
           +K   +  E D+  + +++   + +      L  ++S   +F ++     E  F+H  RE N  A  +A+
Subjt:  TCSQKDMPIEVETDSMEVVKVLTGDNED------LSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCGGGCGGGCTGTTAGAAGTTCGGCCCGTTAAAGAAGTGCTTTTCAAGGCATACCTGAATTCGCAACCGCCGGAGAAGGTGAGGAGCCATGCGAGTCACGTTCC
ATGGAAGAAGCTAGAGAAGAATGTCTTGAAGCTTAACACCGATGCAGCTTGGTTCGAAAAAGAAGGAATTGGAGGGATAGGATGGGTGGTCCATGACTCGAATGGATCCT
TAATCTGTGCCGGAATGGGAAAAATCGAGCGAAAATGGTCGATTAAGGCTCTGGAGGCTAAGGCGATCTGGGATGGGCTCGAGAAGATTATTCCTACCTGCTCTCAGAAG
GATATGCCCATAGAGGTAGAGACTGATTCCATGGAAGTCGTTAAGGTGCTGACTGGAGACAACGAGGACCTGTCGGTATTGAAATCAATCACAGAGGCTTTCTCCACTTT
GGCTTCTCGTGTGTGTGAGATCAAATTCCGCCATTATAGAAGAGAACCAAACACAGTAGCCCACTGTGTAGCTCGATTTGTTTGTAATTTTGACTTTAATGAATCTCAGG
AACAATCCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCGGGCGGGCTGTTAGAAGTTCGGCCCGTTAAAGAAGTGCTTTTCAAGGCATACCTGAATTCGCAACCGCCGGAGAAGGTGAGGAGCCATGCGAGTCACGTTCC
ATGGAAGAAGCTAGAGAAGAATGTCTTGAAGCTTAACACCGATGCAGCTTGGTTCGAAAAAGAAGGAATTGGAGGGATAGGATGGGTGGTCCATGACTCGAATGGATCCT
TAATCTGTGCCGGAATGGGAAAAATCGAGCGAAAATGGTCGATTAAGGCTCTGGAGGCTAAGGCGATCTGGGATGGGCTCGAGAAGATTATTCCTACCTGCTCTCAGAAG
GATATGCCCATAGAGGTAGAGACTGATTCCATGGAAGTCGTTAAGGTGCTGACTGGAGACAACGAGGACCTGTCGGTATTGAAATCAATCACAGAGGCTTTCTCCACTTT
GGCTTCTCGTGTGTGTGAGATCAAATTCCGCCATTATAGAAGAGAACCAAACACAGTAGCCCACTGTGTAGCTCGATTTGTTTGTAATTTTGACTTTAATGAATCTCAGG
AACAATCCCTCTAG
Protein sequenceShow/hide protein sequence
MEAGGLLEVRPVKEVLFKAYLNSQPPEKVRSHASHVPWKKLEKNVLKLNTDAAWFEKEGIGGIGWVVHDSNGSLICAGMGKIERKWSIKALEAKAIWDGLEKIIPTCSQK
DMPIEVETDSMEVVKVLTGDNEDLSVLKSITEAFSTLASRVCEIKFRHYRREPNTVAHCVARFVCNFDFNESQEQSL