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Lag0031212 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031212
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:5833176..5834022
RNA-Seq ExpressionLag0031212
SyntenyLag0031212
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.1e-1333.33Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G ++RN+RG+V+ S  + L N  SVD+AE    ++G+ +A ++G     ++TDS R+  + ++  +D+SE G I+   +    Q       F  R+GN  
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF-VWLEDWPVEASNVL
        AH +A  A     F +W+EDWP+E  + L
Subjt:  AHTMASLAFRYDNF-VWLEDWPVEASNVL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.1e-1638.97Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDS-ACKVLFTYRQGNM
        G ++R+  G V L+   +L     VD  EG+A+ +GIL+A + GF  F ++TDS+R+  +LT D  D SEVGV+   I+  L   +      FT+R GN 
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDS-ACKVLFTYRQGNM

Query:  VAHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS
         AH +A LA    +  +W+E+WP E S+VL  D  S
Subjt:  VAHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS

XP_028115286.1 uncharacterized protein LOC114313136 isoform X1 [Camellia sinensis]3.3e-1336.76Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+RN  GEV+ +  E LP  +  D AE +A  K + +AR +G    H++ DS+R+ KVL E+ + +SE G I+    G+    S   V    RQGN +
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS
        AH +A +A R+ N+  VW+E  P     +   D+SS
Subjt:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS

XP_028115288.1 uncharacterized protein LOC114313136 isoform X3 [Camellia sinensis]3.3e-1336.76Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+RN  GEV+ +  E LP  +  D AE +A  K + +AR +G    H++ DS+R+ KVL E+ + +SE G I+    G+    S   V    RQGN +
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS
        AH +A +A R+ N+  VW+E  P     +   D+SS
Subjt:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS

XP_028115297.1 uncharacterized protein LOC114313136 isoform X6 [Camellia sinensis]3.3e-1336.76Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+RN  GEV+ +  E LP  +  D AE +A  K + +AR +G    H++ DS+R+ KVL E+ + +SE G I+    G+    S   V    RQGN +
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS
        AH +A +A R+ N+  VW+E  P     +   D+SS
Subjt:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112375.5e-1433.33Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G ++RN+RG+V+ S  + L N  SVD+AE    ++G+ +A ++G     ++TDS R+  + ++  +D+SE G I+   +    Q       F  R+GN  
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF-VWLEDWPVEASNVL
        AH +A  A     F +W+EDWP+E  + L
Subjt:  AHTMASLAFRYDNF-VWLEDWPVEASNVL

A0A6J1DBJ7 uncharacterized protein LOC1110189735.3e-1738.97Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDS-ACKVLFTYRQGNM
        G ++R+  G V L+   +L     VD  EG+A+ +GIL+A + GF  F ++TDS+R+  +LT D  D SEVGV+   I+  L   +      FT+R GN 
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDS-ACKVLFTYRQGNM

Query:  VAHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS
         AH +A LA    +  +W+E+WP E S+VL  D  S
Subjt:  VAHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS

A0A7J7G0B6 RNase H domain-containing protein9.7e-1134.09Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+RN  GEV+ +  E LP  +  D AE +A  K I +A+ +GF    ++ DS+ + K L EDV+ + E G ++  + G      + +V    R GNM+
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDN-FVWLEDWPVEASNVLFRD
        AH +A +A   D+  VW+E+ P     V+  D
Subjt:  AHTMASLAFRYDN-FVWLEDWPVEASNVLFRD

A0A7J7GYW5 Uncharacterized protein8.0e-1336.03Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+RN  GEV+ +  E LP  +  D AE +A  K + +AR +GF   H++ DS+R+ K L E+ + +SE G I+    G     S   V    RQGN +
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS
        AH +A +A R+ N+  VW+ D P     +   ++SS
Subjt:  AHTMASLAFRYDNF--VWLEDWPVEASNVLFRDLSS

A0A803LHG6 Uncharacterized protein1.3e-1030.37Show/hide
Query:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV
        G V+R+  G+V+ + C  +     VD+ E  AM   + IA + GF    ++TD+++L   L +   D +  G+++ +I  +     +C   F  R+GN V
Subjt:  GFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMV

Query:  AHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS
        AH++A L+  +D   VWLE++P     ++  D SS
Subjt:  AHTMASLAFRYDNF-VWLEDWPVEASNVLFRDLSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.4e-0632.48Show/hide
Query:  CLRGFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQG
        C  G+VLRNE+GEV   G   LP   SV  AE  AM   +L   +  +     ++DS  L ++L  D    S    I D ++ +L Q +  K +F  R+G
Subjt:  CLRGFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGFFSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQG

Query:  NMVAHTMASLAFRYDNF
        N +A  +A  +  + N+
Subjt:  NMVAHTMASLAFRYDNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTGGGAATGTTCTATGGTTAAATCCTTGTGGTGCTGTTCAAAGTTTGCATCCGTTTACAATTCTTTTTCTGGCGCGGGAAGGCTCTATTGCTTCGGTGGGATT
GCAGCAGTCGGCGTGGGTGTTTGAACAGGTCTCGTCGACTGGTGTGCAGCATGTGCCACCGGGCCGAGACTGGGGCTGCTTGCGGGGGTTTGTATTGCGTAATGAGAGAG
GGGAGGTTCTGCTGTCGGGTTGTGAAATTTTGCCCAATTGTTTGAGTGTGGATTTGGCTGAGGGATGGGCCATGCTGAAGGGTATTCTAATTGCTCGACAAATGGGTTTT
TTCAGTTTTCATGTTAAAACCGACTCGATGCGATTATCGAAAGTGTTGACAGAAGATGTGGACGATATTTCGGAAGTGGGAGTGATTATGGACAACATTCGAGGTATACT
TCATCAAGACTCTGCATGTAAGGTGCTATTCACATATAGGCAAGGCAACATGGTAGCTCATACCATGGCTTCTTTAGCTTTTCGTTATGATAATTTTGTTTGGCTTGAGG
ATTGGCCTGTTGAGGCCTCTAATGTACTTTTTCGTGATTTATCCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCTGGGAATGTTCTATGGTTAAATCCTTGTGGTGCTGTTCAAAGTTTGCATCCGTTTACAATTCTTTTTCTGGCGCGGGAAGGCTCTATTGCTTCGGTGGGATT
GCAGCAGTCGGCGTGGGTGTTTGAACAGGTCTCGTCGACTGGTGTGCAGCATGTGCCACCGGGCCGAGACTGGGGCTGCTTGCGGGGGTTTGTATTGCGTAATGAGAGAG
GGGAGGTTCTGCTGTCGGGTTGTGAAATTTTGCCCAATTGTTTGAGTGTGGATTTGGCTGAGGGATGGGCCATGCTGAAGGGTATTCTAATTGCTCGACAAATGGGTTTT
TTCAGTTTTCATGTTAAAACCGACTCGATGCGATTATCGAAAGTGTTGACAGAAGATGTGGACGATATTTCGGAAGTGGGAGTGATTATGGACAACATTCGAGGTATACT
TCATCAAGACTCTGCATGTAAGGTGCTATTCACATATAGGCAAGGCAACATGGTAGCTCATACCATGGCTTCTTTAGCTTTTCGTTATGATAATTTTGTTTGGCTTGAGG
ATTGGCCTGTTGAGGCCTCTAATGTACTTTTTCGTGATTTATCCTCCTAA
Protein sequenceShow/hide protein sequence
MFSGNVLWLNPCGAVQSLHPFTILFLAREGSIASVGLQQSAWVFEQVSSTGVQHVPPGRDWGCLRGFVLRNERGEVLLSGCEILPNCLSVDLAEGWAMLKGILIARQMGF
FSFHVKTDSMRLSKVLTEDVDDISEVGVIMDNIRGILHQDSACKVLFTYRQGNMVAHTMASLAFRYDNFVWLEDWPVEASNVLFRDLSS