CuGenDBv2

Gene ID	Lag0031279
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon protein
Genome location	chr11:6550025..6550526
RNA-Seq Expression	Lag0031279
Synteny	Lag0031279
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]

3.7e-28

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Query:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        + + A L ECLV  V A GWR DNGTFRPG ++ LK+ + AIAEM  P C+ FGWNDE KCI AEK+ FD WVK+HP AKG+ NKSF H+D+L+Y F KD
Subjt:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

KAA0041617.1 retrotransposon protein [Cucumis melo var. makuwa]

6.6e-25

46.56

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+ +  + + A L ECLV  V A GWRFDNGTFRPG                          ++ LK+ + AI EM    C+ FGWNDE KCI AEK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+H  AKG+ NKSFLH+D L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-25

45.04

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+    + + A L ECLV  V A GWR DNGTFRPG                          ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+HP+AKG+ NKSF+H+D+L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

KAA0057175.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-26

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Query:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        + + A L ECLV  V A GWR DNG FRPG ++ +K+ + A+AEM  P C+ FGWNDE KCI AEK+ FD WVK+H   KG+ NKSF H+D+L+Y F KD
Subjt:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]

2.9e-25

45.04

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+    + + A L ECLV  V A GWR DNGTFRPG                          ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+HP AKG+ NKSF+H+D+L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXX8 Retrotransposon protein

1.8e-28

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Query:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        + + A L ECLV  V A GWR DNGTFRPG ++ LK+ + AIAEM  P C+ FGWNDE KCI AEK+ FD WVK+HP AKG+ NKSF H+D+L+Y F KD
Subjt:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

A0A5A7U098 Retrotransposon protein

8.4e-26

45.04

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+    + + A L ECLV  V A GWR DNGTFRPG                          ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+HP+AKG+ NKSF+H+D+L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

A0A5D3C1M0 Retrotransposon protein

1.4e-25

45.04

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+    + + A L ECLV  V A GWR DNGTFRPG                          ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+HP AKG+ NKSF+H+D+L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

A0A5D3D5F3 Retrotransposon protein

2.2e-26

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Query:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        + + A L ECLV  V A GWR DNG FRPG ++ +K+ + A+AEM  P C+ FGWNDE KCI AEK+ FD WVK+H   KG+ NKSF H+D+L+Y F KD
Subjt:  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

A0A5D3D850 Retrotransposon protein

3.2e-25

46.56

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Query:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF
        P+ +  + + A L ECLV  V A GWRFDNGTFRPG                          ++ LK+ + AI EM    C+ FGWNDE KCI AEK+ F
Subjt:  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG--------------------------VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTF

Query:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
        D WVK+H  AKG+ NKSFLH+D L+Y F KD
Subjt:  DLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTGCATATTCATATTGCAGAATGATCAGTTCATCCACAACCCTGAAGCACACCTGGACGAAAATCAAGGAGCGAAGCTAGGGGAGTGCCTCGTGTCCTTTGTCCAAGC
TAGAGGTTGGAGGTTTGATAATGGGACTTTTAGACCTGGGGTTCGAACCCTAAAGCAACAGTATTGGGCGATTGCAGAAATGATGAGGCCCAGATGCAACGACTTTGGGT
GGAACGATGAATTCAAGTGTATCGAGGCAGAGAAGAAAACATTCGACCTGTGGGTGAAGGCCCATCCTATTGCAAAAGGCATGCGAAATAAGTCGTTCCTGCATTTTGAC
GACTTGGCCTATGCATTCAGAAAGGATTGA

mRNA sequence

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Protein sequence

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MCIFILQNDQFIHNPEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPGVRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFD
DLAYAFRKD

Lag0031279 (gene) of Sponge gourd (AG-4) v1 genome