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Lag0031280 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031280
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr11:6550570..6551032
RNA-Seq ExpressionLag0031280
SyntenyLag0031280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1254.93Show/hide
Query:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE
        LK I  WPKEKRATE + R ++V  L ++P L ++ R KLM ILF +V+  E FLS+P  LKLEYC+ LLE
Subjt:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.8e-1339.64Show/hide
Query:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT
        R    S R  C   +  +     +  V+ ++  I  G   LK IA WPKEKRATE + R +++  L ++P L +R R KL+ ILF +V+  E FLS+P  
Subjt:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT

Query:  LKLEYCDYLLE
         KLEYC+ LL+
Subjt:  LKLEYCDYLLE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.8e-1239.64Show/hide
Query:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT
        R    S R  C   +  +    R+  V+ ++  +  G   LK IA WPKEKRA E + R ++V  L ++P L ++ R KLM ILF +++  E FLS+P  
Subjt:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT

Query:  LKLEYCDYLLE
        LKLEYC+ LL+
Subjt:  LKLEYCDYLLE

XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]9.6e-1455.56Show/hide
Query:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLEK
        LK+IA+WPKEKRATE +   K+V+ L ++P L NRKRV+L+ I+F +VQ T+SF S+P  LKL+YC+ LL++
Subjt:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLEK

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]1.8e-1252.86Show/hide
Query:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLL
        LK IA+W K++ ATE + R K+V  L ++P L  ++++K MNI+F NV  TESFLS+PA +KLEYC+ LL
Subjt:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859538.7e-1339.64Show/hide
Query:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT
        R    S R  C   +  +    R+  V+ ++  +  G   LK IA WPKEKRA E + R ++V  L ++P L ++ R KLM ILF +++  E FLS+P  
Subjt:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT

Query:  LKLEYCDYLLE
        LKLEYC+ LL+
Subjt:  LKLEYCDYLLE

A0A5A7SQU2 Putative nuclease HARBI12.3e-1339.64Show/hide
Query:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT
        R    S R  C   +  +     +  V+ ++  I  G   LK IA WPKEKRATE + R +++  L ++P L +R R KL+ ILF +V+  E FLS+P  
Subjt:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT

Query:  LKLEYCDYLLE
         KLEYC+ LL+
Subjt:  LKLEYCDYLLE

A0A5A7U0H7 Retrotransposon protein8.7e-1339.64Show/hide
Query:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT
        R    S R  C   +  +    R+  V+ ++  +  G   LK IA WPKEKRA E + R ++V  L ++P L ++ R KLM ILF +++  E FLS+P  
Subjt:  RTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGG--LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPAT

Query:  LKLEYCDYLLE
        LKLEYC+ LL+
Subjt:  LKLEYCDYLLE

A0A5D3BBW3 Putative nuclease HARBI11.9e-1246.74Show/hide
Query:  RMSYTRHPVVKTVQQEIHRGGLKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE
        +M  TR  V+++   E     LK IA W KEKRATE +    +V  L ++P L +R R KLM ILF +V+  + FLS+P  LKLEYC+ LLE
Subjt:  RMSYTRHPVVKTVQQEIHRGGLKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE

A0A5D3BZU3 Retrotransposon protein5.1e-1354.93Show/hide
Query:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE
        LK I  WPKEKRATE + R ++V  L ++P L ++ R KLM ILF +V+  E FLS+P  LKLEYC+ LLE
Subjt:  LKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLSVPATLKLEYCDYLLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCAGAGCATATGGAAGAAGAGGTACACCTCAGTGGATCTCAAGAGAACGACATCTCAATCCCATCGTTCACCATGCTTAGTGTGGACATGCCCTAGGATGAGCTA
CACGAGACATCCAGTAGTCAAAACTGTCCAACAGGAAATTCATCGAGGGGGACTGAAGTTGATTGCAAAGTGGCCAAAAGAAAAACGTGCCACAGAGGCCGATTTTCGGG
ATAAAATTGTGACCCACTTAATGGAGGTACCAAATCTGGATAACCGTAAAAGAGTGAAGCTCATGAATATCCTATTCAATAACGTGCAAAAGACGGAGAGCTTTTTATCT
GTTCCGGCTACTCTTAAGCTGGAGTATTGTGACTACCTTCTTGAAAAATACAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCAGAGCATATGGAAGAAGAGGTACACCTCAGTGGATCTCAAGAGAACGACATCTCAATCCCATCGTTCACCATGCTTAGTGTGGACATGCCCTAGGATGAGCTA
CACGAGACATCCAGTAGTCAAAACTGTCCAACAGGAAATTCATCGAGGGGGACTGAAGTTGATTGCAAAGTGGCCAAAAGAAAAACGTGCCACAGAGGCCGATTTTCGGG
ATAAAATTGTGACCCACTTAATGGAGGTACCAAATCTGGATAACCGTAAAAGAGTGAAGCTCATGAATATCCTATTCAATAACGTGCAAAAGACGGAGAGCTTTTTATCT
GTTCCGGCTACTCTTAAGCTGGAGTATTGTGACTACCTTCTTGAAAAATACAGTTGA
Protein sequenceShow/hide protein sequence
MCQSIWKKRYTSVDLKRTTSQSHRSPCLVWTCPRMSYTRHPVVKTVQQEIHRGGLKLIAKWPKEKRATEADFRDKIVTHLMEVPNLDNRKRVKLMNILFNNVQKTESFLS
VPATLKLEYCDYLLEKYS