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Lag0031292 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031292
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:6705988..6706368
RNA-Seq ExpressionLag0031292
SyntenyLag0031292
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]7.4e-1948.8Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+TRS SKGI   +D     +A  I K + ES K  I + +NPL++ +   S + +   +  +MSVMMADV  +  M EME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+NLLMK+V+ERDHEIA LK Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]7.4e-1948.8Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+TRS SKGI   +D     +A  I K + ES K  I + +NPL++ +   S + +   +  +MSVMMADV  +  M EME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+NLLMK+V+ERDHEIA LK Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.4e-1948.8Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+TRS SKGI   +D     +A  I K + ES K  I + +NPL++ +   S + +   +  +MSVMMADV  +  M EME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+NLLMK+V+ERDHEIA LK Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.4e-1948.8Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+TRS SKGI   +D     +A  I K + ES K  I + +NPL++ +   S + +   +  +MSVMMADV  +  M EME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+NLLMK+V+ERDHEIA LK Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]7.4e-1948.8Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+TRS SKGI   +D     +A  I K + ES K  I + +NPL++ +   S + +   +  +MSVMMADV  +  M EME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+NLLMK+V+ERDHEIA LK Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

TrEMBL top hitse value%identityAlignment
A0A5A7ULS4 Ty3-gypsy retrotransposon protein1.5e-1747.2Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        MT KKA +  + +SD+YTGP+TR  SKGI + +D     VA  I K + ES K  I + +N L+D+    S +     + +LMSVMMAD+  +  MVEME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+N LMK+VEERDHEI  L+ Q++
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

A0A5A7V1D2 Ty3-gypsy retrotransposon protein3.4e-1745.9Show/hide
Query:  KKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEMERKL
        KK ++K + +SD YTGP+TRSCSKGI   +D     VA  I K + ESSK  I + +NPL+D+   T  +     +  +MSVMM D+  +  M EMERK+
Subjt:  KKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEMERKL

Query:  NLLMKIVEERDHEIAYLKNQLQ
        N LMK+VE++DHEI  L+ Q++
Subjt:  NLLMKIVEERDHEIAYLKNQLQ

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein2.6e-1746.77Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+Y GP+TRS SKGI   +D     VA  I K + ES K  I + +NPL+D+   TS +        +MSVMMAD+  +  MV+ME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQL
        RK+N LMK++EERDHEI  L++Q+
Subjt:  RKLNLLMKIVEERDHEIAYLKNQL

A0A5D3BSX5 Ty3-gypsy retrotransposon protein3.4e-1745.9Show/hide
Query:  KKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEMERKL
        KK ++K + +SD YTGP+TRSCSKGI   +D     VA  I K + ESSK  I + +NPL+D+   T  +     +  +MSVMM D+  +  M EMERK+
Subjt:  KKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEMERKL

Query:  NLLMKIVEERDHEIAYLKNQLQ
        N LMK+VE++DHEI  L+ Q++
Subjt:  NLLMKIVEERDHEIAYLKNQLQ

A0A5D3CVH6 Ty3-gypsy retrotransposon protein2.9e-1646.4Show/hide
Query:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME
        M  KKA +K + +SD+YTGP+T S SKGI   +D     VA RI K + ES K  I + +NPL+D+    S +     +  +MS MM D+     MVEME
Subjt:  MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEME

Query:  RKLNLLMKIVEERDHEIAYLKNQLQ
        RK+N LMK+VEER HEI  L++Q+Q
Subjt:  RKLNLLMKIVEERDHEIAYLKNQLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACCAAAGAAAGCTCTCGCGAAGGTTACAACATCGAGCGACTCTTACACGGGTCCTGTCACTCGTAGTTGTTCCAAAGGAATCAAGATCAACGAGGATCACACTCT
TCTCACTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGACAAGATTGCAGTCAACGACAACCCATTGTTCGATTCTTTCACTCCAACCTCTAAGCAGC
CAATGGACACACTAAATCTTCATCTGATGTCTGTCATGATGGCTGATGTAGACCAAGATGAAATGATGGTGGAGATGGAAAGAAAACTCAATCTCCTAATGAAGATAGTA
GAGGAAAGGGATCACGAGATTGCCTATTTGAAGAATCAGCTGCAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACCAAAGAAAGCTCTCGCGAAGGTTACAACATCGAGCGACTCTTACACGGGTCCTGTCACTCGTAGTTGTTCCAAAGGAATCAAGATCAACGAGGATCACACTCT
TCTCACTGTTGCAAGTAGGATCTCAAAATTGATTGAAGAATCCTCTAAGGACAAGATTGCAGTCAACGACAACCCATTGTTCGATTCTTTCACTCCAACCTCTAAGCAGC
CAATGGACACACTAAATCTTCATCTGATGTCTGTCATGATGGCTGATGTAGACCAAGATGAAATGATGGTGGAGATGGAAAGAAAACTCAATCTCCTAATGAAGATAGTA
GAGGAAAGGGATCACGAGATTGCCTATTTGAAGAATCAGCTGCAAAATTAA
Protein sequenceShow/hide protein sequence
MTPKKALAKVTTSSDSYTGPVTRSCSKGIKINEDHTLLTVASRISKLIEESSKDKIAVNDNPLFDSFTPTSKQPMDTLNLHLMSVMMADVDQDEMMVEMERKLNLLMKIV
EERDHEIAYLKNQLQN