CuGenDBv2

Gene ID	Lag0031294
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Exonuclease 1
Genome location	chr11:6739408..6741173
RNA-Seq Expression	Lag0031294
Synteny	Lag0031294
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0035312 - 5'-3' exodeoxyribonuclease activity (molecular function)
InterPro domains	IPR006084 - XPG/Rad2 endonuclease IPR006086 - XPG-I domain IPR029060 - PIN-like domain superfamily IPR032641 - Exonuclease 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAF2531092.1 hypothetical protein F2Q70_00030550 [Brassica cretica]

2.2e-14

74.14

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Query:  RTRKENFARAREHETNGNSVATYECYQKMLKMTFLVISNQVDVVLTEDSDLIPFGCPR
        R+RKEN ARA EHE NGNS A YECYQK   MTFL I+ QVD ++TEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKMLKMTFLVISNQVDVVLTEDSDLIPFGCPR

XP_022954760.1 exonuclease 1 isoform X1 [Cucurbita moschata]

3.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

XP_022954763.1 exonuclease 1 isoform X3 [Cucurbita moschata]

3.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

XP_022994762.1 exonuclease 1 isoform X1 [Cucurbita maxima]

3.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

XP_022994764.1 exonuclease 1 isoform X2 [Cucurbita maxima]

3.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GRS7 Exonuclease 1

1.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

A0A6J1GRT3 Exonuclease 1

1.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

A0A6J1K294 Exonuclease 1

1.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

A0A6J1K3T0 Exonuclease 1

1.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

A0A6J1K615 Exonuclease 1

1.8e-14

55.68

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        RTRKEN ARA EHETNGNS A YECYQK +                              +MTFL ISNQVD VLTEDSDLIPFGCPR
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

SwissProt top hits

e value

%identity

Alignment

Q60GC1 Exonuclease 1

9.0e-11

42.39

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Query:  TFHHRTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        T   R+RKEN  RA+EHE+ GNS A +ECYQK +                              +MTFL ++  VD V+TEDSDLIPFGC R
Subjt:  TFHHRTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

Q8L6Z7 Exonuclease 1

6.2e-12

45.45

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        R+RKEN ARA EHE NGNS A YECY K +                              +M FL I+ QVD ++TEDSDLIPFGC R
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

Q8L7M4 Small RNA degrading nuclease 5

5.7e-05

65.62

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Query:  DFRADLWITHYKDVQELVTWVLAEGFMPSWVF
        DF++     + +DVQ LVTWVLAEGFMPSWVF
Subjt:  DFRADLWITHYKDVQELVTWVLAEGFMPSWVF

Arabidopsis top hits

e value

%identity

Alignment

AT1G29630.1 5'-3' exonuclease family protein

4.4e-13

45.45

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        R+RKEN ARA EHE NGNS A YECY K +                              +M FL I+ QVD ++TEDSDLIPFGC R
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

AT1G29630.2 5'-3' exonuclease family protein

4.4e-13

45.45

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Query:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR
        R+RKEN ARA EHE NGNS A YECY K +                              +M FL I+ QVD ++TEDSDLIPFGC R
Subjt:  RTRKENFARAREHETNGNSVATYECYQKML------------------------------KMTFLVISNQVDVVLTEDSDLIPFGCPR

AT1G29630.3 5'-3' exonuclease family protein

5.8e-05

70.37

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Query:  MTFLVISNQVDVVLTEDSDLIPFGCPR
        M FL I+ QVD ++TEDSDLIPFGC R
Subjt:  MTFLVISNQVDVVLTEDSDLIPFGCPR

AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.0e-06

65.62

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Query:  DFRADLWITHYKDVQELVTWVLAEGFMPSWVF
        DF++     + +DVQ LVTWVLAEGFMPSWVF
Subjt:  DFRADLWITHYKDVQELVTWVLAEGFMPSWVF

Sequences

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CDS sequence

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ATGCCTCATGTAAATAATCTCACTTTTCACCACAGGACAAGAAAAGAAAATTTCGCACGTGCAAGAGAACATGAAACAAATGGCAATTCTGTTGCTACCTACGAGTGCTA
CCAGAAGATGCTAAAAATGACCTTCTTGGTTATCAGCAATCAGGTTGATGTCGTTCTTACTGAGGACTCTGATCTAATACCGTTTGGTTGTCCAAGGGACGAAGGAGCTG
TTCGATCAGTACCAGAAGACTTTAGGGCTGATCTGTGGATTACTCACTACAAGGATGTTCAAGAGCTTGTAACTTGGGTGCTTGCTGAAGGTTTTATGCCTTCTTGGGTT
TTTAATTAG

mRNA sequence

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Protein sequence

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MPHVNNLTFHHRTRKENFARAREHETNGNSVATYECYQKMLKMTFLVISNQVDVVLTEDSDLIPFGCPRDEGAVRSVPEDFRADLWITHYKDVQELVTWVLAEGFMPSWV
FN

Lag0031294 (gene) of Sponge gourd (AG-4) v1 genome