CuGenDBv2

Gene ID	Lag0031302
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr11:6833001..6835534
RNA-Seq Expression	Lag0031302
Synteny	Lag0031302
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035247.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.7e-54

40.86

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H SR + RI SDHFPI+ E+    WGP PFR +N  L +K F    P WW N++Q G P YAFI+ LK L+ +IK W+      +  ++K + +EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS
        +ID LE  G ++   H KR+SLKS+LLS+  ++A +  QR +++W   GDEN +FFH++C+  +R+N I  +   NG SL S        +SHF  IY  
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS

Query:  VAVPGWIVGNLNWQPISTEDGSSLIAPFSEQ-VRSSLNLLGNNKAPNPDGFTIEFYKKN--------LEHSQSFHHVGV
              ++ NLNW PIS    S L  PF EQ ++S++  + N KAP PDG+TI FYKK+        L   + FH  G+
Subjt:  VAVPGWIVGNLNWQPISTEDGSSLIAPFSEQ-VRSSLNLLGNNKAPNPDGFTIEFYKKN--------LEHSQSFHHVGV

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.5e-55

43.02

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Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI+ E+   SWGPSPF+  N  L E  F + +  WW+N  Q+GHP ++F+R+LKQL++II++ + +N       K +   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        +ID LE+ G L++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NLNW PIST    +L + F+ E++  +L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

KAA0039966.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.7e-54

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI  E+   SWGPSPF+F N  L E  F   +  WW+N  Q GHP ++F+++LKQL++II+  + +N       KK+   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        NID LE+ G  ++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NL+W PIST    +L + F+ E++ ++L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.7e-54

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI  E+   SWGPSPF+F N  L E  F   +  WW+N  Q GHP ++F+++LKQL++II+  + +N       KK+   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        NID LE+ G  ++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NL+W PIST    +L + F+ E++ ++L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

3.5e-55

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI+ E+   SWGPSPF+  N  L E  F + +  WW+N  Q+GHP ++F+R+LKQL++II++ + +N       K +   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        +ID LE+ G L++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NLNW PIST    +L + F+ E++  +L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

1.7e-55

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI+ E+   SWGPSPF+  N  L E  F + +  WW+N  Q+GHP ++F+R+LKQL++II++ + +N       K +   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        +ID LE+ G L++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NLNW PIST    +L + F+ E++  +L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein

8.3e-55

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI  E+   SWGPSPF+F N  L E  F   +  WW+N  Q GHP ++F+++LKQL++II+  + +N       KK+   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        NID LE+ G  ++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NL+W PIST    +L + F+ E++ ++L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

A0A5D3DFM9 LINE-1 retrotransposable element ORF2 protein

8.3e-55

40.86

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H SR + RI SDHFPI+ E+    WGP PFR +N  L +K F    P WW N++Q G P YAFI+ LK L+ +IK W+      +  ++K + +EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS
        +ID LE  G ++   H KR+SLKS+LLS+  ++A +  QR +++W   GDEN +FFH++C+  +R+N I  +   NG SL S        +SHF  IY  
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS

Query:  VAVPGWIVGNLNWQPISTEDGSSLIAPFSEQ-VRSSLNLLGNNKAPNPDGFTIEFYKKN--------LEHSQSFHHVGV
              ++ NLNW PIS    S L  PF EQ ++S++  + N KAP PDG+TI FYKK+        L   + FH  G+
Subjt:  VAVPGWIVGNLNWQPISTEDGSSLIAPFSEQ-VRSSLNLLGNNKAPNPDGFTIEFYKKN--------LEHSQSFHHVGV

A0A5D3DLM2 LINE-1 retrotransposable element ORF2 protein

8.3e-55

43.02

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Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI  E+   SWGPSPF+F N  L E  F   +  WW+N  Q GHP ++F+++LKQL++II+  + +N       KK+   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        NID LE+ G  ++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NL+W PIST    +L + F+ E++ ++L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

1.7e-55

43.02

Show/hide

Query:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA
        F  H S+ L+R+TSDHFPI+ E+   SWGPSPF+  N  L E  F + +  WW+N  Q+GHP ++F+R+LKQL++II++ + +N       K +   EI 
Subjt:  FNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIA

Query:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G
        +ID LE+ G L++   L+R  LK+D+L     EA++  Q+ K+ W+++GDENTSFFHK+CSAR+RR+ IS + +++G    ++       L HF  IY G
Subjt:  NIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIY-G

Query:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK
              W++ NLNW PIST    +L + F+ E++  +L    NNK+P PDGFT+EFYK
Subjt:  SVAVPGWIVGNLNWQPISTEDGSSLIAPFS-EQVRSSLNLLGNNKAPNPDGFTIEFYK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

8.9e-17

27.6

Show/hide

Query:  SDHFP--ILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIANIDSLESLGQL
        SDH P  I+ EN         FR+ +FL     F+  L   WE     G   ++    LK      K    Q  GN  H+ K   D + +I S       
Subjt:  SDHFP--ILQENQDSSWGPSPFRFDNFLLHEKAFVSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIANIDSLESLGQL

Query:  NDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS---VAVPGWIV
        +    ++ ++ K      A  E+    Q+ + KWL DGD NT FFHK+  A + +N I  L   +   + + +Q +  I++++T + GS   +  P  + 
Subjt:  NDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSFFHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGS---VAVPGWIV

Query:  GNLNWQPISTED--GSSLIA-PFSEQVRSSLNLLGNNKAPNPDGFTIEFY
           +  P    D   S L A P  +++ +++  +  NKAP PD FT EF+
Subjt:  GNLNWQPISTED--GSSLIA-PFSEQVRSSLNLLGNNKAPNPDGFTIEFY

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAAAAACATGCTAAAAGGACCCCGTGTTGGTTTGTGGGGACAGTCTTCAATCTTAGAAGCAGTTTCAGACAAGTA
TGGTGACGTGACCAGGTCGCACGGGAATGCCAGGGTCGTTAGGTGCCGAATCCAGATTCCGAATCTTTGGCCTGGGGCTTCCAAATTTAATGACCACCGTTCTAGAAGAC
TCAACAGAATTACTTCTGATCATTTTCCCATCCTTCAAGAAAATCAAGATTCTTCATGGGGCCCAAGCCCATTTCGCTTCGACAATTTTCTCCTCCATGAAAAAGCTTTT
GTTAGCCTGCTGCCTGGTTGGTGGGAGAACACTGAACAACAGGGTCATCCAAGATATGCCTTTATCCGAAGGCTAAAACAACTCGCTTCAATCATTAAATCCTGGAAATG
CCAGAATGCTGGCAACTTTGCTCACCGCAAGAAATCAATCAGTGATGAAATTGCCAATATTGACTCATTAGAATCTTTGGGCCAACTGAATGATGCGACCCACCTGAAAA
GATTATCTCTAAAATCTGACTTGTTGTCCGTGGCTCTTCATGAAGCTAGACTTCTGAGTCAGCGCTGTAAAAAAAAGTGGCTTTCTGATGGTGATGAGAACACCTCTTTC
TTCCATAAAATGTGTTCAGCCCGTCGTCGTAGAAACACAATATCAGAACTTATTACTATTAATGGTAACAGCTTGGTTTCTGATTCTCAAAAGGAGGTTGAAATTTTATC
TCACTTTACTCAGATTTACGGCTCTGTCGCTGTCCCGGGATGGATTGTTGGCAATCTAAATTGGCAGCCTATTAGTACGGAGGACGGCTCCTCTCTTATTGCCCCTTTCT
CCGAGCAGGTCCGATCTAGTTTAAATCTGTTGGGGAACAACAAGGCTCCTAACCCAGATGGTTTCACGATCGAATTCTATAAAAAAAATTTGGAACATTCTCAGTCCTTT
CATCATGTCGGTGTTCCATGA

mRNA sequence

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Protein sequence

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MRFRCVGTFIPFKNMLKGPRVGLWGQSSILEAVSDKYGDVTRSHGNARVVRCRIQIPNLWPGASKFNDHRSRRLNRITSDHFPILQENQDSSWGPSPFRFDNFLLHEKAF
VSLLPGWWENTEQQGHPRYAFIRRLKQLASIIKSWKCQNAGNFAHRKKSISDEIANIDSLESLGQLNDATHLKRLSLKSDLLSVALHEARLLSQRCKKKWLSDGDENTSF
FHKMCSARRRRNTISELITINGNSLVSDSQKEVEILSHFTQIYGSVAVPGWIVGNLNWQPISTEDGSSLIAPFSEQVRSSLNLLGNNKAPNPDGFTIEFYKKNLEHSQSF
HHVGVP

Lag0031302 (gene) of Sponge gourd (AG-4) v1 genome