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Lag0031461 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031461
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionnigrin b-like
Genome locationchr11:8812826..8813247
RNA-Seq ExpressionLag0031461
SyntenyLag0031461
Gene Ontology termsNA
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAM33270.1 monomeric lectin Llm precursor [Sambucus ebulus]1.4e-0537.35Show/hide
Query:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC
        T+  S T +++GRD LC+DV  GY+ D  P QLW C +Q NQ W          Y DGT+      +   G  +GS+ M   C
Subjt:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC

KAA0059853.1 nigrin b-like [Cucumis melo var. makuwa]1.3e-2449.26Show/hide
Query:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A
        +I +C+VL  SL+GIH+VSA   IV SR+THLVG+D LCLDVI GY+D+HVPTQLW C  QNNQ+W                                 A
Subjt:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A

Query:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
        +P+DKT KLY DGTL H  S LVLT Q TG++ +TT
Subjt:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

XP_016903609.1 PREDICTED: nigrin b-like [Cucumis melo]1.3e-2449.26Show/hide
Query:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A
        +I +C+VL  SL+GIH+VSA   IV SR+THLVG+D LCLDVI GY+D+HVPTQLW C  QNNQ+W                                 A
Subjt:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A

Query:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
        +P+DKT KLY DGTL H  S LVLT Q TG++ +TT
Subjt:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

XP_022150387.1 nigrin b-like [Momordica charantia]1.1e-2855.07Show/hide
Query:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------
        M  IVLCLVL  SL GIH VSA  TIVFSR+TH+VGRD LCLDVI GYND+H+PTQLW C  QN+Q+W                                
Subjt:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------

Query:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
         ANP DKT KLY DGTLAH  S LVLT QATG H +TT
Subjt:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

XP_038885951.1 nigrin b-like [Benincasa hispida]1.5e-2348.55Show/hide
Query:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------
        M ++ L +VL  S +G HDVSA  TIV SR+THLVGRD LCLDVI GY+D H+PTQLW C  QNNQ+W                                
Subjt:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------

Query:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
          +  DKT KLY DGTL H  S LVLTGQ TG H +TT
Subjt:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

TrEMBL top hitse value%identityAlignment
A0A1S4E5V9 nigrin b-like6.4e-2549.26Show/hide
Query:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A
        +I +C+VL  SL+GIH+VSA   IV SR+THLVG+D LCLDVI GY+D+HVPTQLW C  QNNQ+W                                 A
Subjt:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A

Query:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
        +P+DKT KLY DGTL H  S LVLT Q TG++ +TT
Subjt:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

A0A5A7UV90 Nigrin b-like6.4e-2549.26Show/hide
Query:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A
        +I +C+VL  SL+GIH+VSA   IV SR+THLVG+D LCLDVI GY+D+HVPTQLW C  QNNQ+W                                 A
Subjt:  VIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW---------------------------------A

Query:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
        +P+DKT KLY DGTL H  S LVLT Q TG++ +TT
Subjt:  NPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

A0A6J1DVT2 nigrin b-like5.6e-2955.07Show/hide
Query:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------
        M  IVLCLVL  SL GIH VSA  TIVFSR+TH+VGRD LCLDVI GYND+H+PTQLW C  QN+Q+W                                
Subjt:  MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIW--------------------------------

Query:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT
         ANP DKT KLY DGTLAH  S LVLT QATG H +TT
Subjt:  -ANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTT

A7WM72 Monomeric lectin Llm6.6e-0637.35Show/hide
Query:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC
        T+  S T +++GRD LC+DV  GY+ D  P QLW C +Q NQ W          Y DGT+      +   G  +GS+ M   C
Subjt:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC

Q945S3 Lectin (Fragment)1.9e-0537.66Show/hide
Query:  TTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC
        T +++GRD LC+DV  GY+ D  P QLW C  Q NQ W          YTD T+      +   G + GS+ M   C
Subjt:  TTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC

SwissProt top hitse value%identityAlignment
P33183 Nigrin b5.8e-0750.98Show/hide
Query:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKT
        T+  S T ++VGRD LC+DV  GY+ D  P QLW C  Q NQ W   SD T
Subjt:  TIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAATTGTTCTTTGCCTCGTTTTAGTTGTTTCCCTCTCCGGCATCCACGATGTCTCGGCCGGTAGTACCATTGTCTTCAGCAGAACGACGCACCTCGTTGGTCG
AGACGAGCTGTGTTTGGACGTGATCAGAGGGTACAACGATGATCATGTTCCAACTCAACTATGGCAATGCCTTAATCAGAACAACCAGATATGGGCCAATCCAAGTGACA
AGACTTCGAAACTATATACCGATGGCACCCTCGCCCATGCTAGCTCCGACCTCGTCTTGACGGGTCAAGCAACTGGCTCACACCCCATGACAACACGTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAATTGTTCTTTGCCTCGTTTTAGTTGTTTCCCTCTCCGGCATCCACGATGTCTCGGCCGGTAGTACCATTGTCTTCAGCAGAACGACGCACCTCGTTGGTCG
AGACGAGCTGTGTTTGGACGTGATCAGAGGGTACAACGATGATCATGTTCCAACTCAACTATGGCAATGCCTTAATCAGAACAACCAGATATGGGCCAATCCAAGTGACA
AGACTTCGAAACTATATACCGATGGCACCCTCGCCCATGCTAGCTCCGACCTCGTCTTGACGGGTCAAGCAACTGGCTCACACCCCATGACAACACGTTGTTAA
Protein sequenceShow/hide protein sequence
MKVIVLCLVLVVSLSGIHDVSAGSTIVFSRTTHLVGRDELCLDVIRGYNDDHVPTQLWQCLNQNNQIWANPSDKTSKLYTDGTLAHASSDLVLTGQATGSHPMTTRC