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Lag0031474 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031474
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionKatanin p80 WD40 repeat-containing subunit B1 homolog
Genome locationchr11:8943277..8946159
RNA-Seq ExpressionLag0031474
SyntenyLag0031474
Gene Ontology termsGO:0007019 - microtubule depolymerization (biological process)
GO:0051013 - microtubule severing (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0008352 - katanin complex (cellular component)
GO:0008017 - microtubule binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034099.1 katanin p80 WD40 repeat-containing subunit B1-like protein isoform X1 [Cucumis melo var. makuwa]1.9e-1393.48Show/hide
Query:  YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        + EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Subjt:  YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

KAF2530359.1 hypothetical protein F2Q70_00032460 [Brassica cretica]2.5e-1387.5Show/hide
Query:  IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        ++Y EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

KAF3485869.1 hypothetical protein F2Q69_00056502 [Brassica cretica]2.5e-1387.5Show/hide
Query:  IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        ++Y EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  IIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

KAG7031884.1 Katanin p80 WD40 repeat-containing subunit B1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1789.47Show/hide
Query:  EGSYLFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        EGS+LF  TII TEEFVAHSS VNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Subjt:  EGSYLFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

VDD39377.1 unnamed protein product [Brassica oleracea]3.3e-1382.69Show/hide
Query:  FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        + FT +  EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

TrEMBL top hitse value%identityAlignment
A0A2Z6P2N2 WD_REPEATS_REGION domain-containing protein2.1e-1361.64Show/hide
Query:  LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAKIPTG
        L    ++  EEFVAH+SAVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL    +    S + +  +P G
Subjt:  LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAKIPTG

A0A3P6E5I1 Katanin p80 WD40 repeat-containing subunit B1 homolog1.6e-1382.69Show/hide
Query:  FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        + FT +  EEFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  FSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

A0A5D3CWT2 Katanin p80 WD40 repeat-containing subunit B1 homolog9.3e-1493.48Show/hide
Query:  YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        + EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNL AIGKPNAIL
Subjt:  YTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

A0A7J8RJU7 Katanin p80 WD40 repeat-containing subunit B1 homolog2.1e-1381.13Show/hide
Query:  LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +F F +   EEFVAHSS+VNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  LFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

D8TCP0 Katanin p80 WD40 repeat-containing subunit B1 homolog1.6e-1376.79Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV
        EEFVAHSS VNCLKIGRK+SRVLVTGG+D KVN+ AIGKPNAIL A + +G  SPV
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV

SwissProt top hitse value%identityAlignment
A0A1P8AW69 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.15.1e-0955.36Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV
        +EFVAHS  VNCL IG+K+SR+L+TGG+D+KVNL +IGK  + +   +  G  SPV
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPV

F4HTH8 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.26.0e-1061.36Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EF+AHS+ VNCL IG+K+SR+ +TGG+D+KVNL AIGKP +++
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

F4KB17 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.31.4e-1490.91Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

O61585 Katanin p80 WD40 repeat-containing subunit B17.9e-1058.33Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAK
        +E VAHSS VNCL +G  S RV+VTGGED KVNL A+GK N I+   + SG  SPV   K
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAK

Q8H0T9 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.41.4e-1490.91Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

Arabidopsis top hitse value%identityAlignment
AT1G61210.1 Transducin/WD40 repeat-like superfamily protein4.3e-1161.36Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EF+AHS+ VNCL IG+K+SR+ +TGG+D+KVNL AIGKP +++
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

AT1G61210.2 Transducin/WD40 repeat-like superfamily protein4.3e-1161.36Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EF+AHS+ VNCL IG+K+SR+ +TGG+D+KVNL AIGKP +++
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

AT5G08390.1 Transducin/WD40 repeat-like superfamily protein9.8e-1690.91Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

AT5G23430.1 Transducin/WD40 repeat-like superfamily protein9.8e-1690.91Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL

AT5G23430.2 Transducin/WD40 repeat-like superfamily protein9.8e-1690.91Show/hide
Query:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL
        +EFVAHS+AVNCLKIGRKSSRVLVTGGED KVNL AIGKPNAIL
Subjt:  EEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGCATTCAAGATTTCATTCCTTCACAGGTATTCTCCCTGTACAAAAGCTTTCCTCACAGAAATAGCCTTGGCTTACAATTTGAGGTCGAGGAAGGCTCC
TACCTGTTTTCCTTCACAATTATTTATACAGAAGAATTTGTGGCTCATTCTTCCGCCGTCAATTGCCTGAAGATTGGGAGGAAGTCATCCCGTGTTCTTGTCACA
GGGGGCGAAGACTTCAAAGTTAATCTCAGGGCTATTGGTAAACCCAATGCCATACTGCCGGCGGCGACGAGCAGTGGTCGCCGGTCGCCGGTAGGGATGGCAAAA
ATCCCAACGGGGCGGGGAATCCCCGGTTTGACCGGGTATAGGGGTCAAACCGGGGATCCATTTCGGGTCTGCGGTCGGGGACGGGGCGGGGATGGGGATGCGGGG
ATTTTTCCCCACGGGGACCCGATCCCCGAATGGGGATTCTCCGACCCCAACCCCGACTCCCCGAAACGGGGAATGGGGCGGGGACGGGGATTAAAATTCCCCACG
GGGACGGGGATGGGGAGTGCGTCCCCGGCCCCACCCCGCCCTGTTGCCATCCCTAGTCGCCGGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGCATTCAAGATTTCATTCCTTCACAGGTATTCTCCCTGTACAAAAGCTTTCCTCACAGAAATAGCCTTGGCTTACAATTTGAGGTCGAGGAAGGCTCC
TACCTGTTTTCCTTCACAATTATTTATACAGAAGAATTTGTGGCTCATTCTTCCGCCGTCAATTGCCTGAAGATTGGGAGGAAGTCATCCCGTGTTCTTGTCACA
GGGGGCGAAGACTTCAAAGTTAATCTCAGGGCTATTGGTAAACCCAATGCCATACTGCCGGCGGCGACGAGCAGTGGTCGCCGGTCGCCGGTAGGGATGGCAAAA
ATCCCAACGGGGCGGGGAATCCCCGGTTTGACCGGGTATAGGGGTCAAACCGGGGATCCATTTCGGGTCTGCGGTCGGGGACGGGGCGGGGATGGGGATGCGGGG
ATTTTTCCCCACGGGGACCCGATCCCCGAATGGGGATTCTCCGACCCCAACCCCGACTCCCCGAAACGGGGAATGGGGCGGGGACGGGGATTAAAATTCCCCACG
GGGACGGGGATGGGGAGTGCGTCCCCGGCCCCACCCCGCCCTGTTGCCATCCCTAGTCGCCGGACATAG
Protein sequenceShow/hide protein sequence
MRSIQDFIPSQVFSLYKSFPHRNSLGLQFEVEEGSYLFSFTIIYTEEFVAHSSAVNCLKIGRKSSRVLVTGGEDFKVNLRAIGKPNAILPAATSSGRRSPVGMAK
IPTGRGIPGLTGYRGQTGDPFRVCGRGRGGDGDAGIFPHGDPIPEWGFSDPNPDSPKRGMGRGRGLKFPTGTGMGSASPAPPRPVAIPSRRT