; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0031573 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031573
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr11:10177632..10178420
RNA-Seq ExpressionLag0031573
SyntenyLag0031573
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150613.1 uncharacterized protein LOC111018708, partial [Momordica charantia]8.0e-3131.99Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        MDFH  SDAI+C  F   LTGSA+ W+ RL  RSI+ + +L R FLAQF   +  +K   +L T++Q+ G +LR+Y+ RF +  L+V   ++ +A+   +
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLEDERLL-----------------------------------------------------NSIDRGDY----------------LKKFEKYTPTSIPQ
         GL DE L                                                       S D+G +                 + +E++TPT+IP 
Subjt:  AGLEDERLL-----------------------------------------------------NSIDRGDY----------------LKKFEKYTPTSIPQ

Query:  EQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAK
         +IL  I  +    LL  P KL+  P+ R K  YC FHR+ GH+T +C +LK +IE LIQ+GY K+F  K +
Subjt:  EQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]7.4e-4539.77Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        MD +GVS+A+RC  F  TL GSA+ WF +LKR SI+ FK LARAF+ QF+G R + +P   LLT+KQ++ ESLRDY+ RFN+  LQVEG  +  +++A +
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLEDERLLNSIDR-------------------GDYL---------------------------------------KKFEKYTPTSIPQEQILIEIRNTN
        +G+ DE L  S  +                   G++                                        +KFEKYTPT++P EQ+L+EI++  
Subjt:  AGLEDERLLNSIDR-------------------GDYL---------------------------------------KKFEKYTPTSIPQEQILIEIRNTN

Query:  LLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKA
        LL  P ++K++   R K  YCLFHRD GH+T++C  LK E+E LI+ GYLKE+  + KA
Subjt:  LLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKA

XP_022158965.1 uncharacterized protein LOC111025412 [Momordica charantia]1.5e-3238.01Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        MDF   +DAI+C  F  +LTGSA+ W+ RL  RSI+ + +L R F+AQF      RK   +L T++Q+ GE+LR Y+ RF +   +V  Y++ +A+   +
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLEDERL---LNSIDRGDYLKKFE--KYTP-----------TSIPQEQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKN
         GL DE L   L       + +  E  +  P           T+I   +IL  I  +    LL  P KLK +P+ R+K  YC FHR+ GH+T NC +LK 
Subjt:  AGLEDERL---LNSIDRGDYLKKFE--KYTP-----------TSIPQEQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKN

Query:  EIEALIQNGYLKEFTTKAKAD
        +IE LIQ+GY K+F  K +++
Subjt:  EIEALIQNGYLKEFTTKAKAD

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.9e-3232.96Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        M+  G S AI C  F  TL G+A+ WF RL+  SI+ F +L+R F + F  AR++ KP   LLTVKQQ GE+LRDYI R+N+   QV+GY++G A+  I+
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLE-----------------------------DERLLN-SIDRGDYLK------------------------------------------KFEKYTPTS
         GL                              +ER  N + ++G+  K                                          +F  +T  +
Subjt:  AGLE-----------------------------DERLLN-SIDRGDYLK------------------------------------------KFEKYTPTS

Query:  IPQEQILIEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEF
         P+EQIL+++RN  L   P  +K+NP  R+ + YC FH+D GH T  C +LK +IE+L++ G L+E+
Subjt:  IPQEQILIEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEF

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]1.2e-3132.82Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        M+  G S A  C  F  TL  +A+ W+ +L+  SI+ F +L++  + QF+GAR+Q+ P    L VKQ   ESL+D I RFN   ++VE Y++  A+  I+
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLE-----------------------------------------------------DERLLNSIDRGDYLKK--------FEKYTPTSIPQEQILIEIR
         GL+                                                     +E++ N        KK        F +YTP ++P+EQ+L++IR
Subjt:  AGLE-----------------------------------------------------DERLLNSIDRGDYLKK--------FEKYTPTSIPQEQILIEIR

Query:  NTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTK
        N +LL  P+ +K  P+ RD+S YC +HRD  H+  +C  LK EI++LIQ GYLKEF  K
Subjt:  NTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTK

TrEMBL top hitse value%identityAlignment
A0A2N9H9Y5 Ribonuclease H7.8e-3234.46Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        M  HGVSD I C TF   L GSA+ WF +L+  SI+ F +L+RAF+  F+G R   +P   LL ++Q+ GESLR Y+ RFN  A+Q++  NE  A+ A  
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGL------------------------------------------------EDERL---LNSIDRGDYLKKFEK--------------YTPTSIPQEQIL
        AGL                                                ED RL    N   + DY K   K              +TP ++  +Q+L
Subjt:  AGL------------------------------------------------EDERL---LNSIDRGDYLKKFEK--------------YTPTSIPQEQIL

Query:  IEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKAD
        ++I++   +  P KL+S+P+ R K+ YC FHRD GH+T +C  LK +IEALI+ G L +F  + K D
Subjt:  IEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKAD

A0A2N9IPA1 Ribonuclease H1.2e-3236.48Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        M  HGVSD I C TF   L GSA+ WF +L+  SI+ F +L+RAF+  F+G R   +P   LL ++Q+ GESLR Y+ RFN  A+Q++  NE  A+ A  
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGL----------------------EDERLLN------SIDRGDYLKKFEK--------------YTPTSIPQEQILIEIRNTNLLNAPRKLKSNPDNRD
        AGL                      E ++ +N      + D  DY K   K              +TP ++  +Q+L++I++   +  P KL+S+P  R 
Subjt:  AGL----------------------EDERLLN------SIDRGDYLKKFEK--------------YTPTSIPQEQILIEIRNTNLLNAPRKLKSNPDNRD

Query:  KSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKAD
        K  YC FHRD GH+T +C  LK +IEALI+ G L +F  + K +
Subjt:  KSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKAD

A0A2N9IUL6 Uncharacterized protein1.5e-3538.53Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        M  HGVSD I C TF   L GSA+ WF +L+  SI+ F +L+RAF+  F+G R   +P   LL ++Q+ GESLR Y+ RFN  A+Q++  NE  A+ A  
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGL---------------EDERLLNSIDRGDYLKKFEK--------------YTPTSIPQEQILIEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGH
        AGL                   L+N   + DY K   K              +TP ++  +Q+L++I++   +  P KL+S+P+ R K+ YC FHRD GH
Subjt:  AGL---------------EDERLLNSIDRGDYLKKFEK--------------YTPTSIPQEQILIEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGH

Query:  STRNCIQLKNEIEALIQNGYLKEFTTKAKAD
        +T +C  LK +IEALI+ G L +F  + K D
Subjt:  STRNCIQLKNEIEALIQNGYLKEFTTKAKAD

A0A6J1DWY0 uncharacterized protein LOC1110252933.6e-4539.77Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        MD +GVS+A+RC  F  TL GSA+ WF +LKR SI+ FK LARAF+ QF+G R + +P   LLT+KQ++ ESLRDY+ RFN+  LQVEG  +  +++A +
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLEDERLLNSIDR-------------------GDYL---------------------------------------KKFEKYTPTSIPQEQILIEIRNTN
        +G+ DE L  S  +                   G++                                        +KFEKYTPT++P EQ+L+EI++  
Subjt:  AGLEDERLLNSIDR-------------------GDYL---------------------------------------KKFEKYTPTSIPQEQILIEIRNTN

Query:  LLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKA
        LL  P ++K++   R K  YCLFHRD GH+T++C  LK E+E LI+ GYLKE+  + KA
Subjt:  LLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKA

A0A6J1DXB1 uncharacterized protein LOC1110254127.0e-3338.01Show/hide
Query:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV
        MDF   +DAI+C  F  +LTGSA+ W+ RL  RSI+ + +L R F+AQF      RK   +L T++Q+ GE+LR Y+ RF +   +V  Y++ +A+   +
Subjt:  MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIV

Query:  AGLEDERL---LNSIDRGDYLKKFE--KYTP-----------TSIPQEQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKN
         GL DE L   L       + +  E  +  P           T+I   +IL  I  +    LL  P KLK +P+ R+K  YC FHR+ GH+T NC +LK 
Subjt:  AGLEDERL---LNSIDRGDYLKKFE--KYTP-----------TSIPQEQILIEIRNT---NLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKN

Query:  EIEALIQNGYLKEFTTKAKAD
        +IE LIQ+GY K+F  K +++
Subjt:  EIEALIQNGYLKEFTTKAKAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCTGCACATTCTTTTTCACTCTAACAGGATCAGCCAAGCATTGGTTTGAAAGGTTGAAAAGAAGATCCATCAATTT
TTTCAAGGAATTAGCTCGAGCATTCCTAGCACAATTCATGGGGGCCAGAGAACAGCGCAAGCCAAACATCAACCTCTTAACAGTCAAACAACAGTCAGGTGAGAGCTTAC
GTGATTACATAATGCGTTTTAATGACGTAGCACTACAGGTTGAGGGGTACAATGAGGGAGCAGCCGTAGTAGCCATAGTAGCTGGACTAGAAGACGAAAGACTCCTTAAT
TCAATAGATCGAGGAGACTACTTGAAAAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATAGAGATACGAAATACAAACCTGCTCAATGCACC
CAGGAAGCTGAAGTCAAATCCTGACAATAGAGACAAAAGCCCGTATTGTCTCTTCCATCGAGATCAAGGACATTCAACCAGGAACTGCATTCAGCTAAAAAACGAAATTG
AAGCGTTGATTCAGAACGGATACCTGAAGGAGTTCACCACAAAGGCCAAGGCTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCTGCACATTCTTTTTCACTCTAACAGGATCAGCCAAGCATTGGTTTGAAAGGTTGAAAAGAAGATCCATCAATTT
TTTCAAGGAATTAGCTCGAGCATTCCTAGCACAATTCATGGGGGCCAGAGAACAGCGCAAGCCAAACATCAACCTCTTAACAGTCAAACAACAGTCAGGTGAGAGCTTAC
GTGATTACATAATGCGTTTTAATGACGTAGCACTACAGGTTGAGGGGTACAATGAGGGAGCAGCCGTAGTAGCCATAGTAGCTGGACTAGAAGACGAAAGACTCCTTAAT
TCAATAGATCGAGGAGACTACTTGAAAAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATAGAGATACGAAATACAAACCTGCTCAATGCACC
CAGGAAGCTGAAGTCAAATCCTGACAATAGAGACAAAAGCCCGTATTGTCTCTTCCATCGAGATCAAGGACATTCAACCAGGAACTGCATTCAGCTAAAAAACGAAATTG
AAGCGTTGATTCAGAACGGATACCTGAAGGAGTTCACCACAAAGGCCAAGGCTGACTAG
Protein sequenceShow/hide protein sequence
MDFHGVSDAIRCCTFFFTLTGSAKHWFERLKRRSINFFKELARAFLAQFMGAREQRKPNINLLTVKQQSGESLRDYIMRFNDVALQVEGYNEGAAVVAIVAGLEDERLLN
SIDRGDYLKKFEKYTPTSIPQEQILIEIRNTNLLNAPRKLKSNPDNRDKSPYCLFHRDQGHSTRNCIQLKNEIEALIQNGYLKEFTTKAKAD