; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0031632 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031632
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr11:11062355..11062693
RNA-Seq ExpressionLag0031632
SyntenyLag0031632
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]3.0e-1143.88Show/hide
Query:  HLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG
        H + +E GRK+ +EER G R R+++L+LGT AWVRDCL+A ++  NP  FWRRR L+  V+     +N  GR  L +     GR  S    EGS   G
Subjt:  HLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]2.7e-2050.47Show/hide
Query:  KVNIDWKVFHLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIP
        K+ ID K F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N   FW +RRL+ A+IFFQVL N KGR+ ++S+E F+ RKT IFIP
Subjt:  KVNIDWKVFHLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIP

Query:  EGSNSKG
        EGS   G
Subjt:  EGSNSKG

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein3.7e-1556Show/hide
Query:  MDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG
        M+LD GT A VRDCL   + A NP  FW RR L  A+IFFQVL N++GR+ ++S+E F+G+KT IFI +GS  KG
Subjt:  MDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG

A0A0A0KGZ5 Uncharacterized protein2.5e-0844.87Show/hide
Query:  KVFHLQKN-ETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYG
        K  +L++N + GRK+ +EE  G R  +++L+LG  AWV DCL+A ++  NP GFW RR L+   IFFQ   + +GR G
Subjt:  KVFHLQKN-ETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYG

A0A0A0LY03 Uncharacterized protein1.9e-1645.65Show/hide
Query:  TGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG
        + RK+ +EER G +  ++DLDLGT  WV D L A + A    G W+R++LD  +IFFQVL N   R+ ++S++ F+GRK  +FI EGS   G
Subjt:  TGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X21.4e-1143.88Show/hide
Query:  HLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG
        H + +E GRK+ +EER G R R+++L+LGT AWVRDCL+A ++  NP  FWRRR L+  V+     +N  GR  L +     GR  S    EGS   G
Subjt:  HLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNSKG

A0A5D3CQQ0 Uncharacterized protein1.3e-2050.47Show/hide
Query:  KVNIDWKVFHLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIP
        K+ ID K F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N   FW +RRL+ A+IFFQVL N KGR+ ++S+E F+ RKT IFIP
Subjt:  KVNIDWKVFHLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIP

Query:  EGSNSKG
        EGS   G
Subjt:  EGSNSKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCGTCCAAAGAAGGTGAACATCGACTGGAAGGTGTTTCACCTTCAAAAGAATGAGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAGAGTGAGGCG
AATGGATCTGGATCTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATATCGAAGGCAAAAAACCCGTCGGGATTTTGGAGAAGAAGAAGACTAGATGCTGCAG
TTATTTTCTTTCAGGTGCTGAGGAATTCGAAAGGAAGATATGGCCTGGTATCCATGGAACCCTTTCGCGGGCGGAAAACCTCGATCTTTATTCCAGAAGGATCCAACTCG
AAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCGTCCAAAGAAGGTGAACATCGACTGGAAGGTGTTTCACCTTCAAAAGAATGAGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAGAGTGAGGCG
AATGGATCTGGATCTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATATCGAAGGCAAAAAACCCGTCGGGATTTTGGAGAAGAAGAAGACTAGATGCTGCAG
TTATTTTCTTTCAGGTGCTGAGGAATTCGAAAGGAAGATATGGCCTGGTATCCATGGAACCCTTTCGCGGGCGGAAAACCTCGATCTTTATTCCAGAAGGATCCAACTCG
AAGGGATGA
Protein sequenceShow/hide protein sequence
MNRPKKVNIDWKVFHLQKNETGRKVVLEERKGARVRRMDLDLGTFAWVRDCLMAISKAKNPSGFWRRRRLDAAVIFFQVLRNSKGRYGLVSMEPFRGRKTSIFIPEGSNS
KG