; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0031662 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031662
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:11551853..11552386
RNA-Seq ExpressionLag0031662
SyntenyLag0031662
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026101.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.1e-3560Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFIFR+N  V LLL+YVDD+I+T N+  L++ L+  LDK+FALKDLG L YFLG QV YL  G +LNQ+  + DLL KL + +LKP PSPSV    LS 
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFL
        +  + LE+P +YRS IGALQ LT+TRPDI YIVNQLS  L
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFL

KAA0054331.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.0e-3458.9Show/hide
Query:  LFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLY
        LFIF  +  V LLL+YVDDVI+TGNN  L+  L++ LDK+FALKDLG L YFLG QV YL  G +LNQ+  V DLL KL + +LKPTPS +V    LS  
Subjt:  LFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLY

Query:  SSSLLENPSLYRSVI--GALQYLTHTRPDIEYIVNQLSQFLKAPTD
          +   +P +YRS I  GA+QYLTHTRP+I YIVN LSQFL+ PTD
Subjt:  SSSLLENPSLYRSVI--GALQYLTHTRPDIEYIVNQLSQFLKAPTD

XP_016902198.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo]8.2e-4062.07Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFIFR+N  V LLL+YVDD+I+TGN+  L++ L+  LDK+FALKDLG L YFLG QV YL  G +LNQ+  + DLL KL + +LKPTPSPSV    LS 
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
        +  + LE+P +YRS IGALQ LT+TRPDI YIVNQLSQFL+ PT+
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

XP_022144023.1 uncharacterized protein LOC111013815 [Momordica charantia]3.7e-4062.76Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFI+ + P + LLL+YVDDVI+TGNNV L++ LV+ LDK FALKDLGLL YFLGIQV +LP  +LL Q+  +DD+L  L+M  LKP PSP+V    LS+
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
             + +P LYRS IGALQYLT+TRPDI YIVN LSQFLK PTD
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

XP_038902317.1 uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]2.2e-3761.38Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFI+R    V  LL+YVDDVIITGN   L  QL+  LD +FALKDLG L YFLGIQV YL  GLL+NQ   VDDLL +L++ ++KP  SP+V   KLS 
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
             L  P +YRS I ALQYLTHTRPDI Y+VNQLSQFL+ PTD
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

TrEMBL top hitse value%identityAlignment
A0A1S4E1U4 uncharacterized mitochondrial protein AtMg00810-like isoform X24.0e-4062.07Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFIFR+N  V LLL+YVDD+I+TGN+  L++ L+  LDK+FALKDLG L YFLG QV YL  G +LNQ+  + DLL KL + +LKPTPSPSV    LS 
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
        +  + LE+P +YRS IGALQ LT+TRPDI YIVNQLSQFL+ PT+
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

A0A5D3B8X5 Putative mitochondrial protein1.0e-3560Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFIFR+N  V LLL+YVDD+I+T N+  L++ L+  LDK+FALKDLG L YFLG QV YL  G +LNQ+  + DLL KL + +LKP PSPSV    LS 
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFL
        +  + LE+P +YRS IGALQ LT+TRPDI YIVNQLS  L
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFL

A0A5D3CKB5 Putative mitochondrial protein1.5e-3458.9Show/hide
Query:  LFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLY
        LFIF  +  V LLL+YVDDVI+TGNN  L+  L++ LDK+FALKDLG L YFLG QV YL  G +LNQ+  V DLL KL + +LKPTPS +V    LS  
Subjt:  LFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLY

Query:  SSSLLENPSLYRSVI--GALQYLTHTRPDIEYIVNQLSQFLKAPTD
          +   +P +YRS I  GA+QYLTHTRP+I YIVN LSQFL+ PTD
Subjt:  SSSLLENPSLYRSVI--GALQYLTHTRPDIEYIVNQLSQFLKAPTD

A0A5D3CP94 Putative mitochondrial protein7.3e-3456.25Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFIFRK+  V L L+YVDDVI+TGNN   + +L+++LD +FALKDLG LHYFLG Q+ YL    ++N++  V+ LL K  + +LKP PSPSV    LS+
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPT
         +   LE+P +Y+S  GALQYLT+TR DI YIVN LSQFL+ PT
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPT

A0A6J1CS58 uncharacterized protein LOC1110138151.8e-4062.76Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLFI+ + P + LLL+YVDDVI+TGNNV L++ LV+ LDK FALKDLGLL YFLGIQV +LP  +LL Q+  +DD+L  L+M  LKP PSP+V    LS+
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
             + +P LYRS IGALQYLT+TRPDI YIVN LSQFLK PTD
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.7e-0835.66Show/hide
Query:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELK--PTPSPSVSSHKLSLYSSSLLENPSL
        +LLYVDDV+I   ++  +N     L ++F + DL  + +F+GI++    D + L+Q   V  +L K NM       TP PS  +++L L S      P  
Subjt:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELK--PTPSPSVSSHKLSLYSSSLLENPSL

Query:  YRSVIGALQY-LTHTRPDIEYIVNQLSQF
         RS+IG L Y +  TRPD+   VN LS++
Subjt:  YRSVIGALQY-LTHTRPDIEYIVNQLSQF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-1034.29Show/hide
Query:  LLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVL--YLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLS--LYSSSLLEN
        +LLLYVDD++I G +  L+ +L   L K F +KDLG     LG++++       L L+Q+  ++ +L + NM   KP  +P     KLS  +  +++ E 
Subjt:  LLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVL--YLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLS--LYSSSLLEN

Query:  PSL----YRSVIGALQY-LTHTRPDIEYIVNQLSQFLKAP
         ++    Y S +G+L Y +  TRPDI + V  +S+FL+ P
Subjt:  PSL----YRSVIGALQY-LTHTRPDIEYIVNQLSQFLKAP

P92519 Uncharacterized mitochondrial protein AtMg008101.6e-2245.52Show/hide
Query:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR
        LLLYVDD+++TG++  LLN L+  L   F++KDLG +HYFLGIQ+   P GL L+Q    + +L    M + KP  +P       S+ S++   +PS +R
Subjt:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR

Query:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAPTDTD
        S++GALQYLT TRPDI Y VN + Q +  PT  D
Subjt:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAPTDTD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.3e-3147.59Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLF+ ++   +  +L+YVDD++ITGN+  LL+  +  L +RF++KD   LHYFLGI+   +P GL L+Q+  + DLL + NM   KP  +P   S KLSL
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
        YS + L +P+ YR ++G+LQYL  TRPDI Y VN+LSQF+  PT+
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.0e-2944.83Show/hide
Query:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL
        SLF+ ++   +  +L+YVDD++ITGN+  LL   +  L +RF++K+   LHYFLGI+   +P GL L+Q+    DLL + NM   KP  +P  +S KL+L
Subjt:  SLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSL

Query:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD
        +S + L +P+ YR ++G+LQYL  TRPD+ Y VN+LSQ++  PTD
Subjt:  YSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.3e-1640Show/hide
Query:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR
        +L+YVDD+II  NN   +++L S L   F L+DLG L YFLG+++     G+ + Q+    DLL +  +   KP+  P   S   S +S     +   YR
Subjt:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR

Query:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAP
         +IG L YL  TR DI + VN+LSQF +AP
Subjt:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAP

ATMG00810.1 DNA/RNA polymerases superfamily protein1.2e-2345.52Show/hide
Query:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR
        LLLYVDD+++TG++  LLN L+  L   F++KDLG +HYFLGIQ+   P GL L+Q    + +L    M + KP  +P       S+ S++   +PS +R
Subjt:  LLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPSPSVSSHKLSLYSSSLLENPSLYR

Query:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAPTDTD
        S++GALQYLT TRPDI Y VN + Q +  PT  D
Subjt:  SVIGALQYLTHTRPDIEYIVNQLSQFLKAPTDTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACAATACGTTAAAGCAGACCTTATTGTCGTGGGGATTCTTGAATTCCAGGTCGGATCCTTATTTATTTTTCGCAAAAATCCTGATGTGGCACTTTTGTTGTTGTA
CGTTGATGATGTTATAATCACCGGTAATAATGTTCACTTACTAAATCAATTGGTGTCTGTCCTGGATAAACGCTTTGCCTTAAAAGACCTTGGTTTACTGCACTACTTTT
TGGGGATTCAGGTTCTCTACCTACCTGATGGTTTACTTCTAAATCAACAACACAATGTAGATGATTTGCTGTTTAAGCTCAATATGGGTGAGCTGAAACCAACTCCTTCA
CCGAGTGTTTCAAGTCATAAACTCTCTCTTTATTCGAGCAGTCTTTTGGAAAATCCATCATTATATAGGAGTGTTATTGGTGCTTTGCAGTACTTGACTCACACTCGCCC
TGACATTGAGTACATAGTAAACCAGCTTAGTCAATTTCTTAAGGCTCCTACTGACACTGATAGCGCGCATATCGAGCTATCTTTCCCGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACAATACGTTAAAGCAGACCTTATTGTCGTGGGGATTCTTGAATTCCAGGTCGGATCCTTATTTATTTTTCGCAAAAATCCTGATGTGGCACTTTTGTTGTTGTA
CGTTGATGATGTTATAATCACCGGTAATAATGTTCACTTACTAAATCAATTGGTGTCTGTCCTGGATAAACGCTTTGCCTTAAAAGACCTTGGTTTACTGCACTACTTTT
TGGGGATTCAGGTTCTCTACCTACCTGATGGTTTACTTCTAAATCAACAACACAATGTAGATGATTTGCTGTTTAAGCTCAATATGGGTGAGCTGAAACCAACTCCTTCA
CCGAGTGTTTCAAGTCATAAACTCTCTCTTTATTCGAGCAGTCTTTTGGAAAATCCATCATTATATAGGAGTGTTATTGGTGCTTTGCAGTACTTGACTCACACTCGCCC
TGACATTGAGTACATAGTAAACCAGCTTAGTCAATTTCTTAAGGCTCCTACTGACACTGATAGCGCGCATATCGAGCTATCTTTCCCGTTATAA
Protein sequenceShow/hide protein sequence
MKQYVKADLIVVGILEFQVGSLFIFRKNPDVALLLLYVDDVIITGNNVHLLNQLVSVLDKRFALKDLGLLHYFLGIQVLYLPDGLLLNQQHNVDDLLFKLNMGELKPTPS
PSVSSHKLSLYSSSLLENPSLYRSVIGALQYLTHTRPDIEYIVNQLSQFLKAPTDTDSAHIELSFPL