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Lag0031682 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031682
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr11:11866005..11866409
RNA-Seq ExpressionLag0031682
SyntenyLag0031682
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]8.2e-3254.62Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +V  KFK+P  K YDG  DPI H+D Y    D +G+++AIRC  FSFTLT S + WFQ+LK  SISSFKELARAF++QF G   + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALV
        +  ESL+DY+ RFN+E LQVEG ++   L+
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALV

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.4e-3154.2Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +V  KFK+PT K +DG  D + H+DAYR  MD +GVS+A++C  FS TL+ SA+ WF++LK  SISSFK LA+AF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESL DY+ RFNEE LQVEG +   +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]7.4e-3354.48Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +   KFK+P    YDG  DPI H+DAYR   D + + +AIRC  FSFTLT SA+ WF++LK  SISSFKELA AF++QF+G R + KP   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVAITA
        +  ESL++Y+ RFNEE LQVEG ++  AL+A  +
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVAITA

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.1e-3255.73Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +V  KFK+PT K +D   DP+ H+DAYR  MD +GVS+A+RC  FS TL  SA+ WF++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESLRDY+ RFNEE LQVEG ++  +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]5.7e-3356.49Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +V  KFK+PT KP+DG  +P+ H+DAYR  MD +GVSDAIRC  FS TL  SA+ WF++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESL DY+ RFNEE LQ+EG ++  +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166194.0e-3254.62Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +V  KFK+P  K YDG  DPI H+D Y    D +G+++AIRC  FSFTLT S + WFQ+LK  SISSFKELARAF++QF G   + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALV
        +  ESL+DY+ RFN+E LQVEG ++   L+
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALV

A0A6J1D7D2 uncharacterized protein LOC1110183076.7e-3254.2Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +V  KFK+PT K +DG  D + H+DAYR  MD +GVS+A++C  FS TL+ SA+ WF++LK  SISSFK LA+AF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESL DY+ RFNEE LQVEG +   +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

A0A6J1DWY0 uncharacterized protein LOC1110252931.0e-3255.73Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +V  KFK+PT K +D   DP+ H+DAYR  MD +GVS+A+RC  FS TL  SA+ WF++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESLRDY+ RFNEE LQVEG ++  +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

A0A6J1DZ49 uncharacterized protein LOC1110248513.6e-3354.48Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        MK +   KFK+P    YDG  DPI H+DAYR   D + + +AIRC  FSFTLT SA+ WF++LK  SISSFKELA AF++QF+G R + KP   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVAITA
        +  ESL++Y+ RFNEE LQVEG ++  AL+A  +
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVAITA

A0A6J1E1E7 uncharacterized protein LOC1110255482.7e-3356.49Show/hide
Query:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ
        M+ +V  KFK+PT KP+DG  +P+ H+DAYR  MD +GVSDAIRC  FS TL  SA+ WF++LK  SISSFK LARAF++QF+G R + +P   LLT+KQ
Subjt:  MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQ

Query:  QLDESLRDYITRFNEEALQVEGYSEEAALVA
        +  ESL DY+ RFNEE LQ+EG ++  +L+A
Subjt:  QLDESLRDYITRFNEEALQVEGYSEEAALVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCCACATTCAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACGCTTACAGGAACCGGATGGACTTCCA
TGGCGTTTCAGATGCAATTAGATGTCACGCTTTCTCTTTCACTCTGACACGATCAGCCAAGCAATGGTTTCAGAGGTTGAAGATGATATCCATTAGCTCTTTCAAAGAAC
TAGCCCGAGCATTCATCTCGCAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAACAACAGTTAGATGAGAGTCTGCGTGACTATATA
ACTCGTTTCAACGAGGAAGCTCTACAGGTTGAGGGATACAGTGAAGAAGCAGCCTTAGTAGCCATAACAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCCGAGGTGTCCCAGAAGTTCAAGGTACCCACATTCAAACCATATGATGGCAAGAAGGACCCCATACAACACATAGACGCTTACAGGAACCGGATGGACTTCCA
TGGCGTTTCAGATGCAATTAGATGTCACGCTTTCTCTTTCACTCTGACACGATCAGCCAAGCAATGGTTTCAGAGGTTGAAGATGATATCCATTAGCTCTTTCAAAGAAC
TAGCCCGAGCATTCATCTCGCAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAACAACAGTTAGATGAGAGTCTGCGTGACTATATA
ACTCGTTTCAACGAGGAAGCTCTACAGGTTGAGGGATACAGTGAAGAAGCAGCCTTAGTAGCCATAACAGCATGA
Protein sequenceShow/hide protein sequence
MKAEVSQKFKVPTFKPYDGKKDPIQHIDAYRNRMDFHGVSDAIRCHAFSFTLTRSAKQWFQRLKMISISSFKELARAFISQFMGAREQRKPHINLLTVKQQLDESLRDYI
TRFNEEALQVEGYSEEAALVAITA