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Lag0031730 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031730
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:12976356..12976850
RNA-Seq ExpressionLag0031730
SyntenyLag0031730
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034814.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-3046.75Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  ++TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I          CCMSI+F+DEDLLLGSK HNRPL+V  Y+REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.7e-2946.15Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  + TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I           CMSI+F+DEDLLLGSK HNRPL+VS ++REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

KAA0054202.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-3047.02Show/hide
Query:  RKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDCK
        R+  +K  R+  PI++ESE   +P +   LK FFP  F   I   ++CH  + TE+D   S   E   K +DL   S++DLL L ++ K+T+I +LK+  
Subjt:  RKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDCK

Query:  ASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
         S I          CCMSI+F+DEDLLLGSK HNRPL+VS Y+REQK+++IL+DN STVNI+PKST+N
Subjt:  ASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]2.7e-2946.15Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  + TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I           CMSI+F+DEDLLLGSK HNRPL+VS ++REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

TYK15313.1 uncharacterized protein E5676_scaffold1706G00210 [Cucumis melo var. makuwa]2.1e-2947.98Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQ----TITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLI-A
        ++ K KK TR+LK + EE ++ ++P +  TL +FFP  FL          + CH +N TE++++   + E     KDL  F+V+DLL LPQ+TK  LI A
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQ----TITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLI-A

Query:  VLKDCKASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTM
         L    +S+ A        L CMSI F DEDLLLGSK HNRPL+VS Y+REQ+V RIL+DN ST+NIMPKST+
Subjt:  VLKDCKASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTM

TrEMBL top hitse value%identityAlignment
A0A5A7SUA1 Ty3-gypsy retrotransposon protein9.1e-3146.75Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  ++TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I          CCMSI+F+DEDLLLGSK HNRPL+V  Y+REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

A0A5A7TZU9 Ribonuclease H1.3e-2946.15Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  + TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I           CMSI+F+DEDLLLGSK HNRPL+VS ++REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

A0A5D3BIH8 Uncharacterized protein1.3e-2946.15Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC
        +R+  +K  R+  PI+EESE   +P +P  LK+FFP  F   I   ++CH  + TE+D   S   E   K +DL    ++DLL L ++ K+T+I +LK+ 
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDC

Query:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
          S I           CMSI+F+DEDLLLGSK HNRPL+VS ++REQK+++IL+DN S VNI+PKSTMN
Subjt:  KASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

A0A5D3CTU4 Uncharacterized protein1.0e-2947.98Show/hide
Query:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQ----TITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLI-A
        ++ K KK TR+LK + EE ++ ++P +  TL +FFP  FL          + CH +N TE++++   + E     KDL  F+V+DLL LPQ+TK  LI A
Subjt:  RRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQ----TITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLI-A

Query:  VLKDCKASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTM
         L    +S+ A        L CMSI F DEDLLLGSK HNRPL+VS Y+REQ+V RIL+DN ST+NIMPKST+
Subjt:  VLKDCKASIIA--------LCCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTM

A0A5D3CUG5 Ty3-gypsy retrotransposon protein2.0e-3047.02Show/hide
Query:  RKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDCK
        R+  +K  R+  PI++ESE   +P +   LK FFP  F   I   ++CH  + TE+D   S   E   K +DL   S++DLL L ++ K+T+I +LK+  
Subjt:  RKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDCK

Query:  ASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN
         S I          CCMSI+F+DEDLLLGSK HNRPL+VS Y+REQK+++IL+DN STVNI+PKST+N
Subjt:  ASIIAL--------CCMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAGGAAAAAATGGAAGAAGTATACGAGAAGGCTCAAGCCTATCTTAGAGGAAAGTGAGGAGTGTATCCAACCTCCACAGCCAAAAACTCTAAAAGAATTCTT
CCCAATAACCTTTCTAGCAGGAATCGGTCAAACTATCACATGTCACGTTGTCAATGTGACAGAAGATGATAATGTCACCTCGACCACGTCAGAAGCCGTCACGAAGCTGA
AAGACCTACCTTCCTTTAGTGTAGATGATTTACTATTGCTCCCTCAAAAGACGAAAAATACTCTTATCGCAGTGTTAAAGGATTGTAAAGCATCTATTATTGCTCTATGT
TGCATGTCCATAGCTTTTACTGATGAAGATCTACTACTCGGATCAAAACCTCATAATAGGCCTTTGTTCGTCTCATGCTACATCAGAGAGCAAAAGGTTAGTCGAATTCT
CGTTGACAATGATTCTACTGTCAACATAATGCCCAAGTCTACCATGAACCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAAGGAAAAAATGGAAGAAGTATACGAGAAGGCTCAAGCCTATCTTAGAGGAAAGTGAGGAGTGTATCCAACCTCCACAGCCAAAAACTCTAAAAGAATTCTT
CCCAATAACCTTTCTAGCAGGAATCGGTCAAACTATCACATGTCACGTTGTCAATGTGACAGAAGATGATAATGTCACCTCGACCACGTCAGAAGCCGTCACGAAGCTGA
AAGACCTACCTTCCTTTAGTGTAGATGATTTACTATTGCTCCCTCAAAAGACGAAAAATACTCTTATCGCAGTGTTAAAGGATTGTAAAGCATCTATTATTGCTCTATGT
TGCATGTCCATAGCTTTTACTGATGAAGATCTACTACTCGGATCAAAACCTCATAATAGGCCTTTGTTCGTCTCATGCTACATCAGAGAGCAAAAGGTTAGTCGAATTCT
CGTTGACAATGATTCTACTGTCAACATAATGCCCAAGTCTACCATGAACCTGTAG
Protein sequenceShow/hide protein sequence
MPRRKKWKKYTRRLKPILEESEECIQPPQPKTLKEFFPITFLAGIGQTITCHVVNVTEDDNVTSTTSEAVTKLKDLPSFSVDDLLLLPQKTKNTLIAVLKDCKASIIALC
CMSIAFTDEDLLLGSKPHNRPLFVSCYIREQKVSRILVDNDSTVNIMPKSTMNL