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Lag0031749 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031749
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr11:13547776..13549155
RNA-Seq ExpressionLag0031749
SyntenyLag0031749
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV65579.1 rve domain-containing protein/gag_pre-integrs domain-containing protein [Cephalotus follicularis]3.2e-1342.99Show/hide
Query:  FRYGYHA-KETQELIHSDLYGPMNIRARGGYEYFISFIDDYSR--YGYRAKEIQ-----ELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQR
        F  G H+ K T + IHSDL+GP  + ++GG  YF++FID+YSR  + Y  K +Q     + IHSDL+GP ++ ++GG  YF++FID+YSR   +Y   ++
Subjt:  FRYGYHA-KETQELIHSDLYGPMNIRARGGYEYFISFIDDYSR--YGYRAKEIQ-----ELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQR

Query:  NPRAHTF
        N    TF
Subjt:  NPRAHTF

GFB64941.1 retrotransposon protein, putative, Ty1-copia subclass [Tanacetum cinerariifolium]5.4e-1332.67Show/hide
Query:  AKETQELIHSDLYGRMNIRARGGYEYFINFIDVYSRYGYLYLDDYFRYGYHAKETQELIHSDLYGPMNIRARGGYEYFISFIDD------YSRYGYRAKE
        AK+   LIH+D+ G   I +R    YF+ F D +SRYGY+YL    ++ +   ET ++   ++   +  +    ++  +S + +      Y+    RAK+
Subjt:  AKETQELIHSDLYGRMNIRARGGYEYFINFIDVYSRYGYLYLDDYFRYGYHAKETQELIHSDLYGPMNIRARGGYEYFISFIDD------YSRYGYRAKE

Query:  IQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF
        +  LIH+D+ GP  I  R G  YF++F DD+SRYG +YL   ++    TF
Subjt:  IQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF

KAA0047456.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1277.55Show/hide
Query:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL
        ++R GYR KE  ELIHSDL GPMN++ARGG+EYFISFIDDYSRYG LYL
Subjt:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL

KAA0061169.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-1362.5Show/hide
Query:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTFGPLWTNEH
        GYRAKE  ELIHSDL GPMN++ARGG+EYFISFIDDYSRYG LYL   ++     F    T ++
Subjt:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTFGPLWTNEH

KAA0064277.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-1267.86Show/hide
Query:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF
        GYRAKE  ELIHSDL GPMN++ARGG+EYFISF DDYSRYG LYL   ++     F
Subjt:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF

TrEMBL top hitse value%identityAlignment
A0A1Q3BCD7 Rve domain-containing protein/gag_pre-integrs domain-containing protein1.5e-1342.99Show/hide
Query:  FRYGYHA-KETQELIHSDLYGPMNIRARGGYEYFISFIDDYSR--YGYRAKEIQ-----ELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQR
        F  G H+ K T + IHSDL+GP  + ++GG  YF++FID+YSR  + Y  K +Q     + IHSDL+GP ++ ++GG  YF++FID+YSR   +Y   ++
Subjt:  FRYGYHA-KETQELIHSDLYGPMNIRARGGYEYFISFIDDYSR--YGYRAKEIQ-----ELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQR

Query:  NPRAHTF
        N    TF
Subjt:  NPRAHTF

A0A5A7TZQ3 Gag/pol protein5.8e-1377.55Show/hide
Query:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL
        ++R GYR KE  ELIHSDL GPMN++ARGG+EYFISFIDDYSRYG LYL
Subjt:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL

A0A5A7V634 Gag/pol protein2.6e-1362.5Show/hide
Query:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTFGPLWTNEH
        GYRAKE  ELIHSDL GPMN++ARGG+EYFISFIDDYSRYG LYL   ++     F    T ++
Subjt:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTFGPLWTNEH

A0A5A7VB79 Gag/pol protein7.6e-1367.86Show/hide
Query:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF
        GYRAKE  ELIHSDL GPMN++ARGG+EYFISF DDYSRYG LYL   ++     F
Subjt:  GYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYLSCQRNPRAHTF

A0A5D3DZX8 Gag/pol protein7.6e-1377.55Show/hide
Query:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL
        ++  GYRAKE  ELIHSDL GPMN++ARGG+EYFISFIDDYSRYG LYL
Subjt:  YSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGNLYL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.1e-0451.35Show/hide
Query:  RAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSR
        R   I +L++SD+ GPM I + GG +YF++FIDD SR
Subjt:  RAKEIQELIHSDLYGPMNIRARGGYEYFISFIDDYSR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCTATCAATCGTGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAGTTTCAT
TGATGATTATTCGAGGTATGGCTATCGTGCCAAAGAAACCCAAGAGCTCAAACATTCGGACCCCTATGGACCAATGAACTTTAAAGCTCGAGGAGGGTACGAATATTTCA
TCAGTTTCATTGATGATTATTCGAGGTATGGCTATCTCTACCTGGATGATTATTTTAGGTATGGCTATCATGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTAT
GGACGAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAATTTCATTGATGTTTATTCGAGGTATGGCTATCTCTACCTGGATGATTATTTTAGGTATGGCTA
TCATGCCAAAGAAACCCAAGAACTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTATGAATATTTCATCAGTTTCATTGATGATTATTCGA
GGTATGGCTATCGTGCCAAAGAAATCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAGTTTCATTGAT
GATTATTCGAGGTATGGCAATCTCTACCTATCGTGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCTATCAATCGTGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAGTTTCAT
TGATGATTATTCGAGGTATGGCTATCGTGCCAAAGAAACCCAAGAGCTCAAACATTCGGACCCCTATGGACCAATGAACTTTAAAGCTCGAGGAGGGTACGAATATTTCA
TCAGTTTCATTGATGATTATTCGAGGTATGGCTATCTCTACCTGGATGATTATTTTAGGTATGGCTATCATGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTAT
GGACGAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAATTTCATTGATGTTTATTCGAGGTATGGCTATCTCTACCTGGATGATTATTTTAGGTATGGCTA
TCATGCCAAAGAAACCCAAGAACTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTATGAATATTTCATCAGTTTCATTGATGATTATTCGA
GGTATGGCTATCGTGCCAAAGAAATCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAGAGCTCGAGGAGGGTACGAATATTTCATCAGTTTCATTGAT
GATTATTCGAGGTATGGCAATCTCTACCTATCGTGCCAAAGAAACCCAAGAGCTCATACATTCGGACCTCTATGGACCAATGAACATTAG
Protein sequenceShow/hide protein sequence
MLAINRAKETQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGYRAKETQELKHSDPYGPMNFKARGGYEYFISFIDDYSRYGYLYLDDYFRYGYHAKETQELIHSDLY
GRMNIRARGGYEYFINFIDVYSRYGYLYLDDYFRYGYHAKETQELIHSDLYGPMNIRARGGYEYFISFIDDYSRYGYRAKEIQELIHSDLYGPMNIRARGGYEYFISFID
DYSRYGNLYLSCQRNPRAHTFGPLWTNEH