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Lag0031803 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031803
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr11:15103973..15105832
RNA-Seq ExpressionLag0031803
SyntenyLag0031803
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAW22873.1 putative polyprotein [Solanum lycopersicum]2.6e-1683.64Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK V+TPLA HFKLSKR CPTTEK KE+MS IPYSS+VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

MCH91350.1 gag-pol polyprotein [Trifolium medium]2.1e-1376.36Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK AK VSTPLA HFKLSK  CPT++  KE M++IPYSS VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease [Nicotiana tabacum]2.3e-1272.73Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK VSTPLA H KLSK++CPTT + K  M+ +PYSS VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

PKI64685.1 hypothetical protein CRG98_014901 [Punica granatum]1.2e-1374.55Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        M +AKLVS+PLA+HFKLS + CPT+EK KE M  +PYSS VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

RHN40111.1 putative RNA-directed DNA polymerase [Medicago truncatula]1.7e-1274.55Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK AK VSTPLA HFKL++  CPT++  KEAM +IPYSS VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

TrEMBL top hitse value%identityAlignment
A0A2N9FPQ8 Reverse transcriptase Ty1/copia-type domain-containing protein1.8e-1578.18Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MKHAKLVSTPL  HFKLSK+ CP++ K KE M+SIPYSS+VGSL+YAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

A0A3Q7GYL8 Uncharacterized protein1.1e-1580Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        +K+AK V+TPLA HFKLSKR CPTT+K KE+MS IPYSS+VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

A0A3Q7HB66 gag_pre-integrs domain-containing protein1.1e-1581.82Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK V+TPLA HFKLSKR C TTEK KE+MS IPYSS+VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

A0A3Q7IYG7 gag_pre-integrs domain-containing protein1.4e-1581.82Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK V+TPLA HFKLSKR CPTTEK KE+MS IPYS  VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

Q5GA69 Putative polyprotein1.3e-1683.64Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK V+TPLA HFKLSKR CPTTEK KE+MS IPYSS+VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-1572.73Show/hide
Query:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI
        MK+AK VSTPLA H KLSK++CPTT + K  M+ +PYSS VGSLMYAMVCTRPDI
Subjt:  MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCATGCTAAGCTTGTTAGTACACCACTAGCAACTCACTTCAAGCTAAGCAAGAGAGTTTGTCCTACAACGGAGAAGGGGAAAGAAGCTATGTCATCCATTCCTTA
CTCTTCTATTGTTGGTTCTTTGATGTATGCTATGGTGTGTACTAGACCTGATATTCACATGCAGTCGGAGCTGAAGTCGTCAGATCACTATCGCTTGAGGTGCTGCTCGC
TGGAACCTTCTATGCTCATAGAAGAAGACAATCGGGATGATGGGGATGGGAGAGACGAAGAACCGGTTGAATCGGGGAGGAAGGACTCCTCCTCCCCATTTCTGGCATCG
GGAACGGGAAGGAGGAACTCCTCCTCCCTCCCTCTTTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCATGCTAAGCTTGTTAGTACACCACTAGCAACTCACTTCAAGCTAAGCAAGAGAGTTTGTCCTACAACGGAGAAGGGGAAAGAAGCTATGTCATCCATTCCTTA
CTCTTCTATTGTTGGTTCTTTGATGTATGCTATGGTGTGTACTAGACCTGATATTCACATGCAGTCGGAGCTGAAGTCGTCAGATCACTATCGCTTGAGGTGCTGCTCGC
TGGAACCTTCTATGCTCATAGAAGAAGACAATCGGGATGATGGGGATGGGAGAGACGAAGAACCGGTTGAATCGGGGAGGAAGGACTCCTCCTCCCCATTTCTGGCATCG
GGAACGGGAAGGAGGAACTCCTCCTCCCTCCCTCTTTTCTTTTAA
Protein sequenceShow/hide protein sequence
MKHAKLVSTPLATHFKLSKRVCPTTEKGKEAMSSIPYSSIVGSLMYAMVCTRPDIHMQSELKSSDHYRLRCCSLEPSMLIEEDNRDDGDGRDEEPVESGRKDSSSPFLAS
GTGRRNSSSLPLFF