CuGenDBv2

Gene ID	Lag0031804
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr11:15114492..15116009
RNA-Seq Expression	Lag0031804
Synteny	Lag0031804
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.4e-79

40.44

Show/hide

Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG GNK+S+VKL DD FLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S    PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH
        +QMLHC +AKEIW+ L  IFSSR LA                           Q VDAL+++ K V  +DHILYILA LGS+Y+SM+SVISA+    SV 
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH

Query:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--
        EVM+LL TQE++ ESKL S + +LPSVN+  Q+     ++  ++N +++    S    G                              + C+FRY P  
Subjt:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--

Query:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------
         S+  +P S   SY   N   + PQM+ M+ A D+N D++WYPDSGATNHLTH+  NL++G+EYGG NQ++  NG+GLPI ++G  SF+S          
Subjt:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------

Query:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI
                                        L  + D   G+VLLQG L++GLY+F +    +PS K    +  +S T P  +     S++  LD+
Subjt:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.5e-47

47.11

Show/hide

Query:  SGTSAAMDDSSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHD--DPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWL
        S  S+ +   +    IFG GNK+S+VKL+DDNFLLWKFQI  ALE YDLE+      +PP++YL S+  S+    +S  + PNP Y  WKR +++IS WL
Subjt:  SGTSAAMDDSSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHD--DPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWL

Query:  VGSMSEEILHQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVIS
        +GSMSEEIL+QM+HC +AKEIW  L  IFSSR LA                           Q VDAL+++ K V  +DHILYIL  LG +Y+SM+S+IS
Subjt:  VGSMSEEILHQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVIS

Query:  AKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNLSVQS
        A+    S+ EVM+LL TQE++ ESKL S + +LP V +  Q+
Subjt:  AKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNLSVQS

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

8.2e-43

52.26

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Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG  NK+S+VKL+DDNFLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S  + PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSV
        +QMLHC +AKEIW  L  IFSSR LAQ                            VDAL+++ K V  +DHILYILA LGS+Y+SM+SVI  +    SV
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.4e-79

40.44

Show/hide

Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG GNK+S+VKL DD FLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S    PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH
        +QMLHC +AKEIW+ L  IFSSR LA                           Q VDAL+++ K V  +DHILYILA LGS+Y+SM+SVISA+    SV 
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH

Query:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--
        EVM+LL TQE++ ESKL S + +LPSVN+  Q+     ++  ++N +++    S    G                              + C+FRY P  
Subjt:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--

Query:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------
         S+  +P S   SY   N   + PQM+ M+ A D+N D++WYPDSGATNHLTH+  NL++G+EYGG NQ++  NG+GLPI ++G  SF+S          
Subjt:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------

Query:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI
                                        L  + D   G+VLLQG L++GLY+F +    +PS K    +  +S T P  +     S++  LD+
Subjt:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]

1.7e-56

37.94

Show/hide

Query:  SSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQM
        +S+   PG+KVSIV+L DDN LLWKFQI+ AL+G  LES++  ++D PAQ++Q++ D    E SS+    NP Y +W +QDK+IS+WL+GSM+E+IL QM
Subjt:  SSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQM

Query:  LHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVM
        L C +A+EIW  L  +F+SR LA+                            VD+L+  GK +  EDHI++ILA LG E+++++SVI+A+  PQ++ EV 
Subjt:  LHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVM

Query:  ALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQKSNVSSFPPPFSS------GTEG-------------------------VEECYFR----YAP
        +LL  QE R E  L ++D SLPSVNL++      N+  +S    F P  S+      GT                              CY R    +  
Subjt:  ALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQKSNVSSFPPPFSS------GTEG-------------------------VEECYFR----YAP

Query:  PSAPPN---PGSF-------IPSYNQFN-----------RSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAG
        P+  PN   P  F        PS+N F+            S S  QM  ++ A D N D++WY DSG TNH+T+ FGN ++G+EY G  ++ VGNG G
Subjt:  PSAPPN---PGSF-------IPSYNQFN-----------RSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-79

40.44

Show/hide

Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG GNK+S+VKL DD FLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S    PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH
        +QMLHC +AKEIW+ L  IFSSR LA                           Q VDAL+++ K V  +DHILYILA LGS+Y+SM+SVISA+    SV 
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH

Query:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--
        EVM+LL TQE++ ESKL S + +LPSVN+  Q+     ++  ++N +++    S    G                              + C+FRY P  
Subjt:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--

Query:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------
         S+  +P S   SY   N   + PQM+ M+ A D+N D++WYPDSGATNHLTH+  NL++G+EYGG NQ++  NG+GLPI ++G  SF+S          
Subjt:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------

Query:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI
                                        L  + D   G+VLLQG L++GLY+F +    +PS K    +  +S T P  +     S++  LD+
Subjt:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

2.7e-47

47.11

Show/hide

Query:  SGTSAAMDDSSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHD--DPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWL
        S  S+ +   +    IFG GNK+S+VKL+DDNFLLWKFQI  ALE YDLE+      +PP++YL S+  S+    +S  + PNP Y  WKR +++IS WL
Subjt:  SGTSAAMDDSSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHD--DPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWL

Query:  VGSMSEEILHQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVIS
        +GSMSEEIL+QM+HC +AKEIW  L  IFSSR LA                           Q VDAL+++ K V  +DHILYIL  LG +Y+SM+S+IS
Subjt:  VGSMSEEILHQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVIS

Query:  AKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNLSVQS
        A+    S+ EVM+LL TQE++ ESKL S + +LP V +  Q+
Subjt:  AKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNLSVQS

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

4.0e-43

52.26

Show/hide

Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG  NK+S+VKL+DDNFLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S  + PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSV
        +QMLHC +AKEIW  L  IFSSR LAQ                            VDAL+++ K V  +DHILYILA LGS+Y+SM+SVI  +    SV
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSV

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-79

40.44

Show/hide

Query:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL
        SS  +QIFG GNK+S+VKL DD FLLWKFQI  ALE YDLE+ L    +PP++YL S+  S+    +S    PNP Y  WKRQD++ISSWL+GSMSEEIL
Subjt:  SSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEIL

Query:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH
        +QMLHC +AKEIW+ L  IFSSR LA                           Q VDAL+++ K V  +DHILYILA LGS+Y+SM+SVISA+    SV 
Subjt:  HQMLHCGTAKEIWDCLSQIFSSRNLA---------------------------QYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVH

Query:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--
        EVM+LL TQE++ ESKL S + +LPSVN+  Q+     ++  ++N +++    S    G                              + C+FRY P  
Subjt:  EVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQ-KSNVSSFPPPFSSGTEG-----------------------------VEECYFRYAP--

Query:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------
         S+  +P S   SY   N   + PQM+ M+ A D+N D++WYPDSGATNHLTH+  NL++G+EYGG NQ++  NG+GLPI ++G  SF+S          
Subjt:  PSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS----------

Query:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI
                                        L  + D   G+VLLQG L++GLY+F +    +PS K    +  +S T P  +     S++  LD+
Subjt:  --------------------------------LYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI

A0A6J1DLT9 uncharacterized protein LOC111021757

8.3e-57

37.94

Show/hide

Query:  SSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQM
        +S+   PG+KVSIV+L DDN LLWKFQI+ AL+G  LES++  ++D PAQ++Q++ D    E SS+    NP Y +W +QDK+IS+WL+GSM+E+IL QM
Subjt:  SSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHL--HDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQM

Query:  LHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVM
        L C +A+EIW  L  +F+SR LA+                            VD+L+  GK +  EDHI++ILA LG E+++++SVI+A+  PQ++ EV 
Subjt:  LHCGTAKEIWDCLSQIFSSRNLAQ---------------------------YVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVM

Query:  ALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQKSNVSSFPPPFSS------GTEG-------------------------VEECYFR----YAP
        +LL  QE R E  L ++D SLPSVNL++      N+  +S    F P  S+      GT                              CY R    +  
Subjt:  ALLFTQENRIESKLTSTDASLPSVNLSVQSKPVDNDAQKSNVSSFPPPFSS------GTEG-------------------------VEECYFR----YAP

Query:  PSAPPN---PGSF-------IPSYNQFN-----------RSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAG
        P+  PN   P  F        PS+N F+            S S  QM  ++ A D N D++WY DSG TNH+T+ FGN ++G+EY G  ++ VGNG G
Subjt:  PSAPPN---PGSF-------IPSYNQFN-----------RSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAG

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.2e-21

24.61

Show/hide

Query:  NKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHDD---PPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQMLHCGTAK
        N  ++ KLT  N+L+W  Q+    +GY+L   L      PPA             G+      NP YT+WKRQDK+I S ++G++S  +   +    TA 
Subjt:  NKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHDD---PPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQMLHCGTAK

Query:  EIWDCLSQIFSS---------------------------RNLAQYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVMALLFTQE
        +IW+ L +I+++                           + L    D L+ +GK +D ++ +  +L +L  EY+ ++  I+AK  P ++ E+   L   E
Subjt:  EIWDCLSQIFSS---------------------------RNLAQYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVMALLFTQE

Query:  NRIESKLTSTDASLPSVNLSVQSKPVDN-----------DAQKSNVSSFPPPFSS--------------------GTEG--VEEC-----YFRYAPPSAP
        ++I +  ++T   + +  +S ++    N           D + +N +S P   SS                    G +G   + C     +        P
Subjt:  NRIESKLTSTDASLPSVNLSVQSKPVDN-----------DAQKSNVSSFPPPFSS--------------------GTEG--VEEC-----YFRYAPPSAP

Query:  PNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS
        P+P            +P  P+ N+ L +P      +W  DSGAT+H+T +F NL++   Y G + V V +G+ +PI + G +S S+
Subjt:  PNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.3e-24

25.46

Show/hide

Query:  NKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHDD---PPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQMLHCGTAK
        N  ++ KLT  N+L+W  Q+    +GY+L   L      PPA             G+  V   NP YT+W+RQDK+I S ++G++S  +   +    TA 
Subjt:  NKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHDD---PPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEILHQMLHCGTAK

Query:  EIWDCLSQIFSSRNLAQYV--------DALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNL
        +IW+ L +I+++ +             D L+ +GK +D ++ +  +L +L  +Y+ ++  I+AK  P S+ E+   L  +E+++ + L S +    + N+
Subjt:  EIWDCLSQIFSSRNLAQYV--------DALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNL

Query:  SVQSKPVDNDAQ-----------KSNVSSFPPPFSSGTEG-----------VEECYFRYAPPSAPPNPGSFIPSYNQFNRSPSF----PQMNVMLTAPDI
                N  Q            +N S+   P SSG+              + C  +       P    F  + NQ   +  F    P+ N+ + +P  
Subjt:  SVQSKPVDNDAQ-----------KSNVSSFPPPFSSGTEG-----------VEECYFRYAPPSAPPNPGSFIPSYNQFNRSPSF----PQMNVMLTAPDI

Query:  NHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSSLYVLIDQAFGRVLLQGTLHEGL
         +  +W  DSGAT+H+T +F NL+    Y G + V + +G+ +PI + G +S  +    +D    +VL    +H+ L
Subjt:  NHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGLPILNFGYSSFSSLYVLIDQAFGRVLLQGTLHEGL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTCTCAGAGTGGTACCAGTGCGGCGATGGATGATTCATCTGCTTCCTCGCAAATTTTTGGCCCTGGTAATAAGGTTTCGATTGTGAAGCTTACTGATGATAACTT
CCTTCTGTGGAAATTTCAGATACAATTTGCTCTTGAGGGATATGATTTAGAATCCCATTTGCATGATGATCCTCCTGCTCAATACTTGCAATCTTCCTCTGATTCTAACT
CGGGCGAAGGCTCGTCGACGGTCAAAATCCCTAATCCGGTGTATACAAAGTGGAAACGTCAGGATAAAATCATCTCGTCGTGGCTTGTTGGCTCGATGTCGGAGGAGATA
CTCCATCAAATGCTTCACTGTGGGACTGCTAAAGAAATTTGGGATTGTTTATCTCAAATCTTCTCTTCTCGTAATCTCGCCCAGTATGTCGATGCTTTGTCTGCCGTTGG
AAAAACCGTTGATGTCGAGGATCATATTTTATATATTTTGGCTAGTCTTGGTTCTGAATACGAGTCGATGGTCTCTGTGATTTCAGCAAAAGTAGGTCCTCAATCGGTCC
ATGAGGTTATGGCTCTCTTGTTTACTCAAGAGAATAGGATTGAGAGCAAACTTACTTCTACTGATGCTTCTCTGCCGTCTGTTAATCTATCTGTTCAATCTAAACCTGTT
GATAATGATGCTCAAAAATCTAATGTTTCTTCATTTCCTCCGCCGTTTAGTAGTGGAACAGAGGGCGTGGAGGAGTGTTACTTTCGCTATGCTCCTCCGAGTGCTCCTCC
CAATCCAGGTTCGTTTATTCCCTCATACAATCAGTTTAACCGATCTCCCTCTTTTCCCCAGATGAATGTTATGCTCACTGCTCCTGATATTAATCATGATACATCCTGGT
ACCCTGATTCCGGTGCTACTAATCACCTTACTCATAACTTTGGGAATCTCACTGTTGGAACTGAGTATGGTGGTGCGAATCAAGTCCATGTGGGAAATGGAGCAGGTCTG
CCTATTCTTAACTTTGGATATTCTTCCTTTTCTTCCCTTTATGTACTAATCGATCAAGCGTTTGGTCGGGTTCTGCTCCAAGGGACTCTCCATGAGGGATTGTATCGGTT
TAATGTCTCTATCCCTCAGCAACCATCTCAAAAATCAGCGGTTCAAGCTCTTCATTCCTCCACCACTGTTCCTTTTCATTCATACTATACCTCTATTTCTCATAGTTCTG
AGTTAGATATTTGA

mRNA sequence

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Protein sequence

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MSSQSGTSAAMDDSSASSQIFGPGNKVSIVKLTDDNFLLWKFQIQFALEGYDLESHLHDDPPAQYLQSSSDSNSGEGSSTVKIPNPVYTKWKRQDKIISSWLVGSMSEEI
LHQMLHCGTAKEIWDCLSQIFSSRNLAQYVDALSAVGKTVDVEDHILYILASLGSEYESMVSVISAKVGPQSVHEVMALLFTQENRIESKLTSTDASLPSVNLSVQSKPV
DNDAQKSNVSSFPPPFSSGTEGVEECYFRYAPPSAPPNPGSFIPSYNQFNRSPSFPQMNVMLTAPDINHDTSWYPDSGATNHLTHNFGNLTVGTEYGGANQVHVGNGAGL
PILNFGYSSFSSLYVLIDQAFGRVLLQGTLHEGLYRFNVSIPQQPSQKSAVQALHSSTTVPFHSYYTSISHSSELDI

Lag0031804 (gene) of Sponge gourd (AG-4) v1 genome