CuGenDBv2

Gene ID	Lag0031822
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	NERD domain-containing protein
Genome location	chr11:15388551..15396528
RNA-Seq Expression	Lag0031822
Synteny	Lag0031822
Gene Ontology terms	NA
InterPro domains	IPR011528 - Nuclease-related domain, NERD

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605718.1 hypothetical protein SDJN03_03035, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-49

87.83

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        M+ EILCGFIAFR+LRRFF  RDE+EIETSDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

KAG7035626.1 hypothetical protein SDJN02_02424 [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-49

87.83

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        M+ EILCGFIAFR+LRRFF  RDE+EIETSDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

XP_004148346.1 uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus]

1.1e-52

91.3

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MWAEILCGF+AFRVLRRFFF RDEMEIET DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+CVKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

XP_031738513.1 uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus]

1.1e-52

91.3

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MWAEILCGF+AFRVLRRFFF RDEMEIET DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+CVKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

XP_038888004.1 uncharacterized protein LOC120077943 [Benincasa hispida]

3.7e-53

92.17

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MWAEILCGF+AFRVLRRFFF RDEMEIET DSNALFA ASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVV+CVKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKS ILPDPV+
Subjt:  GDGRQKSEILPDPVS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

5.1e-53

91.3

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MWAEILCGF+AFRVLRRFFF RDEMEIET DS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+CVKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

A0A6J1DTU9 uncharacterized protein LOC111023945

1.0e-48

85.09

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MWAEILCGFIAFRVLRRFF  +DEMEIE SDSNA+FAAASRLEKLYGG++F+GLRIPDADTG RQSIDMVLVTKG+AVV+ VKNLSG VSIS DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPV
        GDG Q+SEI+PDPV
Subjt:  GDGRQKSEILPDPV

A0A6J1H014 uncharacterized protein LOC111459180

1.5e-49

87.83

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        M+ EILCGFIAFR+LRRFF  RDE+EIETSDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

A0A6J1K1B0 uncharacterized protein LOC111490811

4.5e-49

86.96

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MW EILCGFIAFR+LRRFF   D +EIETSDSNALFA ASRLEK+Y GKIFVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+S DGSWICE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGRQKSEILPDPV+
Subjt:  GDGRQKSEILPDPVS

A0A7J7CMM4 Plasma membrane isoform 1

4.5e-41

68.7

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MW EI CG I ++++RRFF   D +++ETSDSNA+F+ A+RLEKLYGGK +VGLRIPD DTG RQ+IDMVLVTKGEAVV+ VKNL+GFVS++GDGSW+CE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        GDGR ++E  PDPV+
Subjt:  GDGRQKSEILPDPVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

3.5e-38

59.13

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Query:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE
        MW EI+CG + ++++RRFF+  +  ++ETSDS ALF+ A RLEKLYGGK +VGLRIPDADT  RQ ID+VLVTKG+ VV+ VKNLSG V+++ DGSW+CE
Subjt:  MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICE

Query:  GDGRQKSEILPDPVS
        G     +E  PDP++
Subjt:  GDGRQKSEILPDPVS

Sequences

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CDS sequence

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ATGTGGGCTGAGATACTCTGTGGTTTCATAGCGTTTAGAGTGCTCAGGCGATTCTTTTTTGGAAGGGATGAAATGGAGATCGAGACCTCTGATTCTAATGCCCTATTCGC
CGCAGCTTCAAGACTAGAAAAGCTTTATGGTGGAAAGATTTTTGTGGGACTCCGAATTCCAGATGCCGACACTGGTTTGCGGCAGAGTATTGATATGGTGCTTGTAACCA
AAGGGGAAGCAGTGGTGCTATGTGTCAAAAATCTTTCAGGTTTTGTGTCCATCAGTGGTGATGGCAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTG
CCTGATCCAGTAAGTTTCTTTCATTTAGCTAAAGCTTGTCCCTCGCCTTTACACTTTTCGTGA

mRNA sequence

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Protein sequence

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MWAEILCGFIAFRVLRRFFFGRDEMEIETSDSNALFAAASRLEKLYGGKIFVGLRIPDADTGLRQSIDMVLVTKGEAVVLCVKNLSGFVSISGDGSWICEGDGRQKSEIL
PDPVSFFHLAKACPSPLHFS

Lag0031822 (gene) of Sponge gourd (AG-4) v1 genome