CuGenDBv2

Gene ID	Lag0031859
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein THYLAKOID FORMATION1, chloroplastic
Genome location	chr11:16942921..16944344
RNA-Seq Expression	Lag0031859
Synteny	Lag0031859
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0045037 - protein import into chloroplast stroma (biological process) GO:0045038 - protein import into chloroplast thylakoid membrane (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8645760.1 hypothetical protein Csa_020345 [Cucumis sativus]

4.9e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDAKK EEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

XP_008455361.1 PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]

4.9e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+KLEEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

XP_022136235.1 protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia]

4.9e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDAKKLEEWA+S TA SLVEFAS+EGEV+SILKDIAE+A  KGSF+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

XP_022136236.1 protein THYLAKOID FORMATION1, chloroplastic isoform X2 [Momordica charantia]

4.9e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDAKKLEEWA+S TA SLVEFAS+EGEV+SILKDIAE+A  KGSF+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

XP_022969189.1 protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima]

4.9e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+KLEEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K3P0 Uncharacterized protein

2.4e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDAKK EEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

A0A5D3C7D3 Protein THYLAKOID FORMATION1

2.4e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+KLEEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

A0A6J1C2Y9 protein THYLAKOID FORMATION1, chloroplastic isoform X2

2.4e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDAKKLEEWA+S TA SLVEFAS+EGEV+SILKDIAE+A  KGSF+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

A0A6J1HVN0 protein THYLAKOID FORMATION1, chloroplastic-like isoform X1

2.4e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+KLEEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

A0A6J1I1V8 protein THYLAKOID FORMATION1, chloroplastic-like isoform X2

2.4e-10

80.85

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+KLEEWA+S TA SLVEFASREGEV+SILKDIAE+A SKG+F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

SwissProt top hits

e value

%identity

Alignment

Q84PB7 Protein THYLAKOID FORMATION1, chloroplastic

1.9e-09

59.57

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        R DA+K+EEWA+S    SLVEF+S++GE+++ILKDI+E+A+ KGSF+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

Q9SKT0 Protein THYLAKOID FORMATION 1, chloroplastic

1.6e-08

57.45

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+K+EEWA+S T+ SLV+F+S+EG+++++LKDIA +A SK  F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

Arabidopsis top hits

e value

%identity

Alignment

AT2G20890.1 photosystem II reaction center PSB29 protein

1.2e-09

57.45

Show/hide

Query:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN
        RIDA+K+EEWA+S T+ SLV+F+S+EG+++++LKDIA +A SK  F+
Subjt:  RIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTATAACTTCACTGGAAATAATATTCCTACCTTTGACTATTCTTTCAATAATTTCAAAAATGTTTCTTTATTTTTAGTATTTTCTGTTATTCCGTCTAGAATTGATGC
TAAAAAATTGGAAGAGTGGGCTCAATCTCATACTGCAACTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTCAGAGTATCTTGAAGGACATTGCAGAACAAGCAC
GGAGTAAGGGGAGTTTCAATGATGACATCACGTCAATTTTACCATGGGCGTTTGGAATCCGAAATTTTACCGTTGAAGAGAAGGAGGCTAAGCGAAGAAAAAGACAACAG
AGAGTTGAAGAACAAGAAAGAGCGAGAGAGGAGGAGGTTGTGGCAAAAGAAGATGAAAACCCAAAAGAATCTGACAAACCGAATCAAGAAACAGAGGCTGAAGGTGAGCA
TACCAAGGAGACAACACCGGAGCCGGTGCAGGAGGCCCATGTTGAAATCATTATGCCTGAACCACCCAAGCGCCGCCGCATCAAAAGGAAGGCGGGTCGCGTGAGGGTGG
TTCGGAACACTCCATCGCCTCCGACGTCGGACTCTGAGGAAGAAAGAAGGGAAGCTGAGAATAAGGAAAAAGAAGAAGAGGCAAGAAAGGAAGAAGAAGAACGTTTGCGC
GAACAGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGGGAGAAATTGAGGAGCCGAGGGCGCCATTCATTCGCTACGTCAACGATTTTGCCCGAGCAAAATACCA
GGAGGTGCTGAAACGAGACTTCTTGTTCGAACGTGGATTTGGCAATGATTTACCTAGGTTTTTGGAGTCTGGAATAGTGAACCTCGGTTGGAGGCAATTTTGTGCGAAGC
TAGAACCTGTGAATGCCAACATTGTTCGAGAATTTTACGCCAACCTTGACATTAAGAATGATTTTGAGGTTATTGTTCGAGGAGTGCCTGTACAGTGGAGCCCTGAGGCC
ATCAATGAAATGTTCGATCTCCAGGATTTTCCGCATGTCGTTTTTAATGAGATGGTGGCTGCACCATCTAGTGATCAACTGAGTGCGGCTGTCCGGGAGGTAGGCATTGA
GGGGGCCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MYNFTGNNIPTFDYSFNNFKNVSLFLVFSVIPSRIDAKKLEEWAQSHTATSLVEFASREGEVQSILKDIAEQARSKGSFNDDITSILPWAFGIRNFTVEEKEAKRRKRQQ
RVEEQERAREEEVVAKEDENPKESDKPNQETEAEGEHTKETTPEPVQEAHVEIIMPEPPKRRRIKRKAGRVRVVRNTPSPPTSDSEEERREAENKEKEEEARKEEEERLR
EQRESKGKGIAEASGEIEEPRAPFIRYVNDFARAKYQEVLKRDFLFERGFGNDLPRFLESGIVNLGWRQFCAKLEPVNANIVREFYANLDIKNDFEVIVRGVPVQWSPEA
INEMFDLQDFPHVVFNEMVAAPSSDQLSAAVREVGIEGA

Lag0031859 (gene) of Sponge gourd (AG-4) v1 genome