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Lag0031891 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031891
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:17904665..17905198
RNA-Seq ExpressionLag0031891
SyntenyLag0031891
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]3.3e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-2034.68Show/hide
Query:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE
        LP+P    G    LW   S+  F  AS +    + S++      P++   LW+   PKK  FF+WT++H  ++TADRLQ+   +  LSPN C +C+ + E
Subjt:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE

Query:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF
         ++HLF  CP    +W +  QA       P+    L +   S  I++Q+GL+    I    W IW ERN+RIF
Subjt:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-2034.68Show/hide
Query:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE
        LP+P    G    LW   S+  F  AS +    + S++      P++   LW+   PKK  FF+WT++H  ++TADRLQ+   +  LSPN C +C+ + E
Subjt:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE

Query:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF
         ++HLF  CP    +W +  QA       P+    L +   S  I++Q+GL+    I    W IW ERN+RIF
Subjt:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]2.5e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T+D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

RVW74148.1 putative ribonuclease H protein [Vitis vinifera]3.3e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein1.2e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T+D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

A0A438GPP0 Putative ribonuclease H protein1.6e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.1e-2034.68Show/hide
Query:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE
        LP+P    G    LW   S+  F  AS +    + S++      P++   LW+   PKK  FF+WT++H  ++TADRLQ+   +  LSPN C +C+ + E
Subjt:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE

Query:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF
         ++HLF  CP    +W +  QA       P+    L +   S  I++Q+GL+    I    W IW ERN+RIF
Subjt:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein2.1e-2035.26Show/hide
Query:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE
        LP+P    G    LW   S+  F  AS +      +    A   PN+   LW+   PKK  FF+WT++H  ++TADRLQ+   + ALSPN C +C+ + E
Subjt:  LPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSE

Query:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF
         ++HLF  CP    +W +  +A       P+    L +   S  IR+Q+GL+         W IW ERN+RIF
Subjt:  SLDHLFALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF

A5BPI6 Uncharacterized protein1.6e-2036.59Show/hide
Query:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP
        D   W   SSG F+V S  L+   IS      V P  L  +W + +P K+ FF+W V H++++T D LQ    + ALSP++C +C    E++DHLF  C 
Subjt:  DSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLFALCP

Query:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF
        +  G+W ++FQ +   +  P     +    F+    S+RG+ L+QA  +A  WV+W ERN+RIF
Subjt:  LVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGL-LFQALIVATFWVIWNERNSRIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGTTGCTGCCTTCTCCCTCGTTCACTCTAGGATGCGATTCTCTCTTATGGTTGCATCTCTCAAGCGGTCCTTTTTCAGTAGCTTCAGCACGCCTTTCTTTTTG
GGATATCTCTTCTACTCGTCGTGCCCAGGTGGACCCAAATATTCTTACAAATTTGTGGCGTGCAACGATCCCAAAGAAAGTCGGATTCTTTATGTGGACAGTGCTTCACC
GTCGGCTTCACACGGCTGATCGTCTGCAAAGAGTTTTTCAACATTCCGCCTTAAGCCCAAATGTTTGCTCTATCTGCCACGCAAACTCAGAATCATTGGATCACCTTTTT
GCTCTCTGCCCGTTGGTTTCTGGTATGTGGGTTCAGATTTTTCAAGCTTCGGATGCTCAATTTCCCATCCCTTCTCAAGCTCATATGCTCTGTGAGGAGGCTTTTTCTTT
CAAGATTCGCTCTCAAAGGGGTTTGCTTTTCCAAGCTCTGATTGTGGCTACCTTTTGGGTTATTTGGAATGAGCGGAATAGTAGAATCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGTTGCTGCCTTCTCCCTCGTTCACTCTAGGATGCGATTCTCTCTTATGGTTGCATCTCTCAAGCGGTCCTTTTTCAGTAGCTTCAGCACGCCTTTCTTTTTG
GGATATCTCTTCTACTCGTCGTGCCCAGGTGGACCCAAATATTCTTACAAATTTGTGGCGTGCAACGATCCCAAAGAAAGTCGGATTCTTTATGTGGACAGTGCTTCACC
GTCGGCTTCACACGGCTGATCGTCTGCAAAGAGTTTTTCAACATTCCGCCTTAAGCCCAAATGTTTGCTCTATCTGCCACGCAAACTCAGAATCATTGGATCACCTTTTT
GCTCTCTGCCCGTTGGTTTCTGGTATGTGGGTTCAGATTTTTCAAGCTTCGGATGCTCAATTTCCCATCCCTTCTCAAGCTCATATGCTCTGTGAGGAGGCTTTTTCTTT
CAAGATTCGCTCTCAAAGGGGTTTGCTTTTCCAAGCTCTGATTGTGGCTACCTTTTGGGTTATTTGGAATGAGCGGAATAGTAGAATCTTTTGA
Protein sequenceShow/hide protein sequence
MASLLPSPSFTLGCDSLLWLHLSSGPFSVASARLSFWDISSTRRAQVDPNILTNLWRATIPKKVGFFMWTVLHRRLHTADRLQRVFQHSALSPNVCSICHANSESLDHLF
ALCPLVSGMWVQIFQASDAQFPIPSQAHMLCEEAFSFKIRSQRGLLFQALIVATFWVIWNERNSRIF