CuGenDBv2

Gene ID	Lag0031904
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr11:18323047..18323553
RNA-Seq Expression	Lag0031904
Synteny	Lag0031904
Gene Ontology terms	GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0090304 - nucleic acid metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016874 - ligase activity (molecular function) GO:0043168 - anion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8518236.1 hypothetical protein F0562_015710 [Nyssa sinensis]

3.1e-36

49.39

Show/hide

Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +LR+HSL   +DG+HPCP +F+ +  G   T +N  Y  W  QD AL+TL+NATLS+   S +IGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRTRS  ++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

1.5e-35

47.56

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +L++HSL   +DG++PCP++F+ +  G     +N  Y  W  QD AL+TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRT+S +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

KAA8529544.1 hypothetical protein F0562_033657 [Nyssa sinensis]

1.4e-36

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +LR+HSL   +DG+HPCP +F+ +  G   T +N  Y  W  QD AL+TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRTRS +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]

1.5e-35

47.56

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +L++HSL   +DG++PCP++F+ +  G     +N  Y  W  QD AL+TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRT+S +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

KAA8539318.1 hypothetical protein F0562_026010 [Nyssa sinensis]

2.4e-36

47.56

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +L++HSL   +DG++PCP++F+ +  G     +NL Y  W  QD A++TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRT+S +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

TrEMBL top hits

e value

%identity

Alignment

A0A5B7BD59 Retrotran_gag_3 domain-containing protein

1.9e-36

47.56

Show/hide

Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +LR+H+L   VDG+H CP +FLC+  G   T  N +Y  WI QD AL+ +INATL+    S VIGYK+S++VW+AL++  SS  RS++ +LK+ L S++K
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +++D Y+ ++K   D LA V V +DD+D+ +YTLNGLP+EFN F T+IRTR+  ++L+E+H
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

A0A5J4ZKU4 Retrotran_gag_3 domain-containing protein

1.5e-36

49.39

Show/hide

Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +LR+HSL   +DG+HPCP +F+ +  G   T +N  Y  W  QD AL+TL+NATLS+   S +IGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRTRS  ++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein

7.4e-36

47.56

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +L++HSL   +DG++PCP++F+ +  G     +N  Y  W  QD AL+TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRT+S +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

A0A5J5AH34 PlsC domain-containing protein

6.7e-37

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +LR+HSL   +DG+HPCP +F+ +  G   T +N  Y  W  QD AL+TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRTRS +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

A0A5J5B9N3 Retrotran_gag_3 domain-containing protein

1.1e-36

47.56

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Query:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK
        +L++HSL   +DG++PCP++F+ +  G     +NL Y  W  QD A++TL+NATLS+   S VIGY +S+E W+AL++R S+  RS++ +LKSALH+ISK
Subjt:  MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISK

Query:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH
           +S+D Y+ +IK   D LA V V ++D+DI +Y LNGLP E+N F TSIRT+S +++L+E++
Subjt:  SPIESVDDYLIRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTTAGGTCACACTCTTTGTTCGACATTGTGGATGGATCTCATCCTTGTCCTGATGAATTTCTATGCAATGTTGATGGAAACAAACTCACAACTGTGAATCTTGCATA
TACTCAATGGATCCCTCAAGATCTCGCCCTAATTACTCTCATTAATGCAACTCTTTCGAAGGCAACCTTCTCCTTCGTTATCGGTTACAAATCGTCTCAAGAGGTATGGA
TTGCTTTACAAAAACGATTATCCTCTTTAATACGATCTCATGTTCATGAGTTGAAATCTGCCTTGCACTCTATCTCTAAGTCTCCGATTGAATCTGTGGATGATTATCTC
ATCCGTATAAAAGGGGTTGTTGATCAATTGGCCATTGTCGTCGTTACCGTTGATGATGATGACATACGACTTTATACCTTAAATGGTCTTCCTACTGAATTTAATTTGTT
TCACACTTCAATTCGTACTCGAAGTACTTCTGTCAGTCTTGATGAACTCCATGAGACCACAATGTAA

mRNA sequence

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Protein sequence

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MLRSHSLFDIVDGSHPCPDEFLCNVDGNKLTTVNLAYTQWIPQDLALITLINATLSKATFSFVIGYKSSQEVWIALQKRLSSLIRSHVHELKSALHSISKSPIESVDDYL
IRIKGVVDQLAIVVVTVDDDDIRLYTLNGLPTEFNLFHTSIRTRSTSVSLDELHETTM

Lag0031904 (gene) of Sponge gourd (AG-4) v1 genome