; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0031927 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031927
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr11:19325517..19331214
RNA-Seq ExpressionLag0031927
SyntenyLag0031927
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022926214.1 uncharacterized protein LOC111433394 [Cucurbita moschata]6.6e-3836.64Show/hide
Query:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK
        P+++  L        +D  +   +  + +RL+LF YSL DG K+WLN+ A G+I +WN LVEK L KYFPPTRN + R+EIV F+Q ED+T SEAWERFK
Subjt:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK

Query:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------
        E+L    H   P                  VV+A+                                                                 
Subjt:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------

Query:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN
                      AV+NQ A ESCVYCGEE  ++ CP+NP S+F+VGNQ      +NNP+SN YNPGWRNHPNF+W GQGS N Q   K N
Subjt:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]4.9e-3335.71Show/hide
Query:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL----------------------L
        + +RL+LF Y L DG K+WLN+ A G+I +WN L E  L KYFPPTRN + ++EIV F+Q EDET SEA ERFKE+L                      +
Subjt:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL----------------------L

Query:  VSHQPPPV----------------------------------------------------------------------------VEATAVVNQVAEESCV
        V+ Q                                                                                V   A +NQ A ESCV
Subjt:  VSHQPPPV----------------------------------------------------------------------------VEATAVVNQVAEESCV

Query:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQG-SNLQAQQKVN
        YCGEE  ++ CP+NP S+F+VGNQ      +NNP+SN YNPGWRNHPNF+W GQ   N Q   K N
Subjt:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQG-SNLQAQQKVN

XP_022960432.1 uncharacterized protein LOC111461168 [Cucurbita moschata]1.2e-3435.46Show/hide
Query:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK
        P+++  L        +D  +   +  + +RL+LF YSL DG K+WLN+ A  +I +WN L EK L KYFPPTRN + R+EIV F+Q EDET SEAWERFK
Subjt:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK

Query:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------
        E+L    H   P                  VV+A+                                                                 
Subjt:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------

Query:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFV------GNQRNNPYSNFYNPGWRNHPNFAWGGQGS
                      AV+ Q A ESCVYCGEE  ++ CP NP S+ +V      GNQ+NNP SN YNPGWRNHPNF+W GQGS
Subjt:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFV------GNQRNNPYSNFYNPGWRNHPNFAWGGQGS

XP_030494694.1 uncharacterized protein LOC115710474 [Cannabis sativa]4.3e-3741.67Show/hide
Query:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL-LVSHQPPPVV------------
        EALRL LF +SL D  + WLN+    S+  WN+L EK L KYFPPTRN K RSEI+ F+QLEDET S+AWERFKELL    H   P+V            
Subjt:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL-LVSHQPPPVV------------

Query:  -------------------EATAVVNQVA---------------------------EESCVYCGEEQNYEYCPNNPTSVFFVGNQ----RNNPYSNFYNP
                           EA  ++ ++A                           E SCVYCG+   +E CP+NP SV +VGNQ     NNPYSN YNP
Subjt:  -------------------EATAVVNQVA---------------------------EESCVYCGEEQNYEYCPNNPTSVFFVGNQ----RNNPYSNFYNP

Query:  GWRNHPNFAWGGQG---SNLQAQQKVNQSRFAKSQALPEQ
         W++HPNF+WGGQG   S  Q Q+K +       Q  P+Q
Subjt:  GWRNHPNFAWGGQG---SNLQAQQKVNQSRFAKSQALPEQ

XP_030510138.1 uncharacterized protein LOC115724905 [Cannabis sativa]8.3e-3334.62Show/hide
Query:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK
        P ++  L        +D  K   +  EALRL LF +SL D  + WLN+  S S+  WN+L E  L KYFPPTRN K RSEI+ F+QLEDET S+AWERFK
Subjt:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK

Query:  ELLL----------------------------------------------------------------VSHQPPPVVEATAVVN----------------
        ELL                                                                  S +   V+E  A+                  
Subjt:  ELLL----------------------------------------------------------------VSHQPPPVVEATAVVN----------------

Query:  -----------QVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ----RNNPYSNFYNPGWRNHPNFAWGGQGSNLQAQQKVNQSRF
                   Q AE SCVYCG+   +E CP+NP SV +VGNQ     NNPYSN YNP W++HPNF+WGGQG++    Q   +  F
Subjt:  -----------QVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ----RNNPYSNFYNPGWRNHPNFAWGGQGSNLQAQQKVNQSRF

TrEMBL top hitse value%identityAlignment
A0A6J1E1F3 uncharacterized protein LOC1110250653.0e-2837.22Show/hide
Query:  KGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELLL---------------
        K   L  E LRL LF YSL D  +TWL S    SI +W++L EK L KYFPP++N K RSEI  F+Q   E+ SE+WE FK LL                
Subjt:  KGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELLL---------------

Query:  -------VSHQPPP------------------------------------------VVEATAVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVG---NQ
                +  P P                                           +  TA VNQ+   SC +C  + +Y  CP NP SV+++G   N 
Subjt:  -------VSHQPPP------------------------------------------VVEATAVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVG---NQ

Query:  RNNPYSNFYNPGWRNHPNFAWGG
        RNN YSN YNPGWRNHPNF+W G
Subjt:  RNNPYSNFYNPGWRNHPNFAWGG

A0A6J1EEI2 uncharacterized protein LOC1114333943.2e-3836.64Show/hide
Query:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK
        P+++  L        +D  +   +  + +RL+LF YSL DG K+WLN+ A G+I +WN LVEK L KYFPPTRN + R+EIV F+Q ED+T SEAWERFK
Subjt:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK

Query:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------
        E+L    H   P                  VV+A+                                                                 
Subjt:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------

Query:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN
                      AV+NQ A ESCVYCGEE  ++ CP+NP S+F+VGNQ      +NNP+SN YNPGWRNHPNF+W GQGS N Q   K N
Subjt:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN

A0A6J1EQ90 uncharacterized protein LOC1114364112.4e-3335.71Show/hide
Query:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL----------------------L
        + +RL+LF Y L DG K+WLN+ A G+I +WN L E  L KYFPPTRN + ++EIV F+Q EDET SEA ERFKE+L                      +
Subjt:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL----------------------L

Query:  VSHQPPPV----------------------------------------------------------------------------VEATAVVNQVAEESCV
        V+ Q                                                                                V   A +NQ A ESCV
Subjt:  VSHQPPPV----------------------------------------------------------------------------VEATAVVNQVAEESCV

Query:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQG-SNLQAQQKVN
        YCGEE  ++ CP+NP S+F+VGNQ      +NNP+SN YNPGWRNHPNF+W GQ   N Q   K N
Subjt:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQG-SNLQAQQKVN

A0A6J1G7Q6 uncharacterized protein LOC1114515988.4e-3136.09Show/hide
Query:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL-LVSHQPPP--------------
        + +RL+ F YSL DG K+WLN  A G I +WN L EK L KYFPPTR+ + R+EIV F++ E+ET SEAWERFKE L    H   P              
Subjt:  EALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFKELL-LVSHQPPP--------------

Query:  ----VVEATA-------------------------------------------------------------------------------VVNQVAEESCV
            VV+A+A                                                                               V+ Q A ESCV
Subjt:  ----VVEATA-------------------------------------------------------------------------------VVNQVAEESCV

Query:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN
        YCGE+  ++ CP+NP S+F+VGNQ      + NP SN YNPGWRNHPNF   GQGS N Q   K N
Subjt:  YCGEEQNYEYCPNNPTSVFFVGNQ------RNNPYSNFYNPGWRNHPNFAWGGQGS-NLQAQQKVN

A0A6J1H7E4 uncharacterized protein LOC1114611685.6e-3535.46Show/hide
Query:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK
        P+++  L        +D  +   +  + +RL+LF YSL DG K+WLN+ A  +I +WN L EK L KYFPPTRN + R+EIV F+Q EDET SEAWERFK
Subjt:  PNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDETFSEAWERFK

Query:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------
        E+L    H   P                  VV+A+                                                                 
Subjt:  ELL-LVSHQPPP------------------VVEAT-----------------------------------------------------------------

Query:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFV------GNQRNNPYSNFYNPGWRNHPNFAWGGQGS
                      AV+ Q A ESCVYCGEE  ++ CP NP S+ +V      GNQ+NNP SN YNPGWRNHPNF+W GQGS
Subjt:  --------------AVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFV------GNQRNNPYSNFYNPGWRNHPNFAWGGQGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGAGCAGGATTCAAGGCTTTGCTCGTGGAGATCGTGATGGGAACGTGCGGTCTCGGGATATTGGATTCATTACATTGTCGAGATGTTGCCAAGAATTTCCATT
TCAGATTTGTGCGGCAAGGGACAGCACCGTGACGCTGTCAACAGTTTTCTATAAATACAATCTTATGTGCTACGACCAAGGGGAGCTCAATTTGAGAGATTTTAGACCTA
AAACCGATTGGAGACCTTCTGTGGGAGCTGAAGCAAGGCCAAGGAGCGGGAATCACTCAAAAACGTGGGGATACGAGGACGTGCGGTTTTCAGTGGAACAAAAAAATAAT
GTTGAGCGACTTGAGGGAGCAAAATCTGTGATCCAGCAAAGCAAGGAGCAAAACTGGCACCCGAATAAGGAGGAACGATTGGAGACTCCAAGAAGACCATCAACTACGGA
TTTCATCAAGGGAATTAATCTTTTCTTGGAGGCCCTTAGATTAACTTTGTTCCTGTATTCTCTTGGAGATGGAGTAAAGACGTGGTTAAATTCTTTTGCTTCAGGATCAA
TTAGAACTTGGAATGAGTTAGTGGAAAAATGTCTCAGTAAGTATTTTCCACCAACTAGGAATGTCAAGTTAAGGAGTGAGATAGTGGGATTTAGGCAACTCGAAGATGAA
ACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAACTTTTGTTAGTTAGTCATCAGCCGCCACCAGTGGTGGAGGCTACTGCAGTGGTGAACCAAGTTGCGGAGGAATCATG
TGTCTATTGTGGTGAAGAGCAAAACTACGAGTATTGCCCGAATAATCCAACTTCTGTGTTTTTTGTAGGTAATCAAAGGAATAACCCTTATTCTAACTTTTATAATCCAG
GTTGGCGCAACCACCCCAACTTTGCATGGGGAGGACAAGGAAGCAATCTGCAAGCACAGCAAAAGGTGAACCAGTCAAGATTTGCTAAATCGCAAGCATTGCCCGAGCAA
AATAAGCATGTTTTGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGAGCAGGATTCAAGGCTTTGCTCGTGGAGATCGTGATGGGAACGTGCGGTCTCGGGATATTGGATTCATTACATTGTCGAGATGTTGCCAAGAATTTCCATT
TCAGATTTGTGCGGCAAGGGACAGCACCGTGACGCTGTCAACAGTTTTCTATAAATACAATCTTATGTGCTACGACCAAGGGGAGCTCAATTTGAGAGATTTTAGACCTA
AAACCGATTGGAGACCTTCTGTGGGAGCTGAAGCAAGGCCAAGGAGCGGGAATCACTCAAAAACGTGGGGATACGAGGACGTGCGGTTTTCAGTGGAACAAAAAAATAAT
GTTGAGCGACTTGAGGGAGCAAAATCTGTGATCCAGCAAAGCAAGGAGCAAAACTGGCACCCGAATAAGGAGGAACGATTGGAGACTCCAAGAAGACCATCAACTACGGA
TTTCATCAAGGGAATTAATCTTTTCTTGGAGGCCCTTAGATTAACTTTGTTCCTGTATTCTCTTGGAGATGGAGTAAAGACGTGGTTAAATTCTTTTGCTTCAGGATCAA
TTAGAACTTGGAATGAGTTAGTGGAAAAATGTCTCAGTAAGTATTTTCCACCAACTAGGAATGTCAAGTTAAGGAGTGAGATAGTGGGATTTAGGCAACTCGAAGATGAA
ACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAACTTTTGTTAGTTAGTCATCAGCCGCCACCAGTGGTGGAGGCTACTGCAGTGGTGAACCAAGTTGCGGAGGAATCATG
TGTCTATTGTGGTGAAGAGCAAAACTACGAGTATTGCCCGAATAATCCAACTTCTGTGTTTTTTGTAGGTAATCAAAGGAATAACCCTTATTCTAACTTTTATAATCCAG
GTTGGCGCAACCACCCCAACTTTGCATGGGGAGGACAAGGAAGCAATCTGCAAGCACAGCAAAAGGTGAACCAGTCAAGATTTGCTAAATCGCAAGCATTGCCCGAGCAA
AATAAGCATGTTTTGCCCTAG
Protein sequenceShow/hide protein sequence
MERSRIQGFARGDRDGNVRSRDIGFITLSRCCQEFPFQICAARDSTVTLSTVFYKYNLMCYDQGELNLRDFRPKTDWRPSVGAEARPRSGNHSKTWGYEDVRFSVEQKNN
VERLEGAKSVIQQSKEQNWHPNKEERLETPRRPSTTDFIKGINLFLEALRLTLFLYSLGDGVKTWLNSFASGSIRTWNELVEKCLSKYFPPTRNVKLRSEIVGFRQLEDE
TFSEAWERFKELLLVSHQPPPVVEATAVVNQVAEESCVYCGEEQNYEYCPNNPTSVFFVGNQRNNPYSNFYNPGWRNHPNFAWGGQGSNLQAQQKVNQSRFAKSQALPEQ
NKHVLP