; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0031939 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031939
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr11:19755185..19755556
RNA-Seq ExpressionLag0031939
SyntenyLag0031939
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]2.7e-0541.41Show/hide
Query:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGF-NSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---N
        + IGERI+YGIKHG++ + TT     KKG  SKK EGEV  IGF NS +      + +Y       N   YINN S    + YV  P HT    P+   +
Subjt:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGF-NSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---N

Query:  QQNTPYVHGHQNNKGVRRQTHFDPIPMT
            P+V G Q +K       FDPIPMT
Subjt:  QQNTPYVHGHQNNKGVRRQTHFDPIPMT

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]2.7e-0540.16Show/hide
Query:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGFNSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---NQ
        + IGERI+YGIKHG++ + TT     KKG  SKK EGEV  IGF +   + +    Q  Y   F +   YI+N S    + YV  P HT    P+   + 
Subjt:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGFNSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---NQ

Query:  QNTPYVHGHQNNKGVRRQTHFDPIPMT
           P+V G Q +K       FDPIPMT
Subjt:  QNTPYVHGHQNNKGVRRQTHFDPIPMT

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]6.6e-2047.52Show/hide
Query:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPY-PNPAVPQYHYPPPFVNPQPYINNTSAQY-----------SSPYVQ
        MTIGERI+YG++HG+IT TT   + AKK   SKK EGEVQM+G +     +QPY   P    Y+YP P+   QP++NN ++ Y           +S   Q
Subjt:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPY-PNPAVPQYHYPPPFVNPQPYINNTSAQY-----------SSPYVQ

Query:  NPHHTQGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT
            +Q +QPR QQ NT Y  G QNN+G R+QT FDPIPMT
Subjt:  NPHHTQGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]5.6e-1948.46Show/hide
Query:  MTIGERIDYGIKHGKITDTT-RSSIAKKGVPSKKNEGEVQMIGFNS---RQP--YPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR
        +TIGERI+YG+ HG+IT T   SS  K    SKK EGEVQM+G +    RQP          Y+YP P+   QPY+N  + QY++     P  +QG+QPR
Subjt:  MTIGERIDYGIKHGKITDTT-RSSIAKKGVPSKKNEGEVQMIGFNS---RQP--YPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR

Query:  N-QQNTPYVHGHQNNKGVRRQTHFDPIPMT
          QQNT Y  G QNN+  R+Q+ FDPIPMT
Subjt:  N-QQNTPYVHGHQNNKGVRRQTHFDPIPMT

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.2e-1847.52Show/hide
Query:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPYP-NPAVPQYHYPPPFVNPQPYINNTSAQYS--------SPYVQNPH
        MTIGERI+YG++HG+IT T    + AKK   SKK EGEVQM+G +     +QPY   P    Y+YP P+   QP++NN ++ YS         P  QN  
Subjt:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPYP-NPAVPQYHYPPPFVNPQPYINNTSAQYS--------SPYVQNPH

Query:  HT---QGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT
         T   Q +QPR QQ NT Y    Q N+G R+QT FDPIPMT
Subjt:  HT---QGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT

TrEMBL top hitse value%identityAlignment
A0A5A7T1W2 Retrotrans_gag domain-containing protein1.3e-0541.41Show/hide
Query:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGF-NSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---N
        + IGERI+YGIKHG++ + TT     KKG  SKK EGEV  IGF NS +      + +Y       N   YINN S    + YV  P HT    P+   +
Subjt:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGF-NSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---N

Query:  QQNTPYVHGHQNNKGVRRQTHFDPIPMT
            P+V G Q +K       FDPIPMT
Subjt:  QQNTPYVHGHQNNKGVRRQTHFDPIPMT

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein1.3e-0540.16Show/hide
Query:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGFNSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---NQ
        + IGERI+YGIKHG++ + TT     KKG  SKK EGEV  IGF +   + +    Q  Y   F +   YI+N S    + YV  P HT    P+   + 
Subjt:  MTIGERIDYGIKHGKITD-TTRSSIAKKGVPSKKNEGEVQMIGFNSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR---NQ

Query:  QNTPYVHGHQNNKGVRRQTHFDPIPMT
           P+V G Q +K       FDPIPMT
Subjt:  QNTPYVHGHQNNKGVRRQTHFDPIPMT

A0A6J1D099 Ribonuclease H3.2e-2047.52Show/hide
Query:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPY-PNPAVPQYHYPPPFVNPQPYINNTSAQY-----------SSPYVQ
        MTIGERI+YG++HG+IT TT   + AKK   SKK EGEVQM+G +     +QPY   P    Y+YP P+   QP++NN ++ Y           +S   Q
Subjt:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPY-PNPAVPQYHYPPPFVNPQPYINNTSAQY-----------SSPYVQ

Query:  NPHHTQGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT
            +Q +QPR QQ NT Y  G QNN+G R+QT FDPIPMT
Subjt:  NPHHTQGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.7e-1948.46Show/hide
Query:  MTIGERIDYGIKHGKITDTT-RSSIAKKGVPSKKNEGEVQMIGFNS---RQP--YPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR
        +TIGERI+YG+ HG+IT T   SS  K    SKK EGEVQM+G +    RQP          Y+YP P+   QPY+N  + QY++     P  +QG+QPR
Subjt:  MTIGERIDYGIKHGKITDTT-RSSIAKKGVPSKKNEGEVQMIGFNS---RQP--YPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPR

Query:  N-QQNTPYVHGHQNNKGVRRQTHFDPIPMT
          QQNT Y  G QNN+  R+Q+ FDPIPMT
Subjt:  N-QQNTPYVHGHQNNKGVRRQTHFDPIPMT

A0A6J1E2J7 Ribonuclease H6.0e-1947.52Show/hide
Query:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPYP-NPAVPQYHYPPPFVNPQPYINNTSAQYS--------SPYVQNPH
        MTIGERI+YG++HG+IT T    + AKK   SKK EGEVQM+G +     +QPY   P    Y+YP P+   QP++NN ++ YS         P  QN  
Subjt:  MTIGERIDYGIKHGKITDTTRSSI-AKKGVPSKKNEGEVQMIGFN----SRQPYP-NPAVPQYHYPPPFVNPQPYINNTSAQYS--------SPYVQNPH

Query:  HT---QGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT
         T   Q +QPR QQ NT Y    Q N+G R+QT FDPIPMT
Subjt:  HT---QGYQPRNQQ-NTPYVHGHQNNKGVRRQTHFDPIPMT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATTGGAGAGAGAATCGATTACGGAATTAAGCATGGAAAGATAACTGATACGACTAGATCATCAATAGCGAAAAAGGGGGTTCCATCGAAGAAAAACGAGGGAGA
AGTTCAGATGATTGGTTTCAATTCAAGACAACCATACCCTAATCCCGCGGTGCCACAATATCATTATCCACCTCCATTTGTTAACCCTCAACCCTACATCAATAATACGT
CAGCCCAATACTCATCACCTTACGTCCAAAATCCTCATCATACTCAAGGCTACCAGCCTCGGAATCAACAGAACACTCCTTATGTCCATGGACACCAAAACAATAAAGGC
GTTCGTAGACAGACTCATTTTGATCCGATTCCGATGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAATTGGAGAGAGAATCGATTACGGAATTAAGCATGGAAAGATAACTGATACGACTAGATCATCAATAGCGAAAAAGGGGGTTCCATCGAAGAAAAACGAGGGAGA
AGTTCAGATGATTGGTTTCAATTCAAGACAACCATACCCTAATCCCGCGGTGCCACAATATCATTATCCACCTCCATTTGTTAACCCTCAACCCTACATCAATAATACGT
CAGCCCAATACTCATCACCTTACGTCCAAAATCCTCATCATACTCAAGGCTACCAGCCTCGGAATCAACAGAACACTCCTTATGTCCATGGACACCAAAACAATAAAGGC
GTTCGTAGACAGACTCATTTTGATCCGATTCCGATGACATAA
Protein sequenceShow/hide protein sequence
MTIGERIDYGIKHGKITDTTRSSIAKKGVPSKKNEGEVQMIGFNSRQPYPNPAVPQYHYPPPFVNPQPYINNTSAQYSSPYVQNPHHTQGYQPRNQQNTPYVHGHQNNKG
VRRQTHFDPIPMT