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Lag0031957 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031957
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:20641778..20642134
RNA-Seq ExpressionLag0031957
SyntenyLag0031957
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156662.1 uncharacterized protein LOC111023512 [Momordica charantia]3.8e-0448.15Show/hide
Query:  NLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        NL     S+EEY+ EFT++SRFA E++DTE  K  RFI+ L+D+ +  V  L P
Subjt:  NLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

XP_022928602.1 uncharacterized protein LOC111435460 [Cucurbita moschata]1.4e-0655.36Show/hide
Query:  EGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL
        E   +L     ++EEYELEFTR+SRFA E +DTEEK+T +FILGLR ++Q  V A+
Subjt:  EGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL

XP_022961586.1 uncharacterized protein LOC111462120 [Cucurbita moschata]1.3e-0439.68Show/hide
Query:  QVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        Q+++ +   +LV R  ++E+Y  EF ++ RFA  M+DTEEK T +F+LGL   ++R++ A  P
Subjt:  QVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

XP_023543569.1 uncharacterized protein LOC111803417 [Cucurbita pepo subsp. pepo]8.2e-0751.61Show/hide
Query:  YQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL
        Y     E   +L     ++EEYELEFTR+SRFA E +DTEEK+T +FILGLR ++Q  V A+
Subjt:  YQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL

XP_038880159.1 uncharacterized protein LOC120071839 [Benincasa hispida]2.0e-0537.65Show/hide
Query:  ATWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        ATWD     +     +   +H +  K     NL     ++EEYE +FTR+S FA +++ TE K+  RF+ GLRD+V+ +V AL P
Subjt:  ATWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

TrEMBL top hitse value%identityAlignment
A0A5A7SV35 Ty3-gypsy retrotransposon protein9.2e-0433.33Show/hide
Query:  TWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        TW+     + S   ++  ++ +  K +   NL     S+E+Y++EF+ +SRFA +++  EE +T +F+ GLR D+Q +V AL P
Subjt:  TWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

A0A5D3CAY7 Ty3-gypsy retrotransposon protein9.2e-0433.33Show/hide
Query:  TWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        TW+     + S   ++  ++ +  K +   NL     S+E+Y++EF+ +SRFA +++  EE +T +F+ GLR D+Q +V AL P
Subjt:  TWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

A0A6J1DSJ6 uncharacterized protein LOC1110235121.9e-0448.15Show/hide
Query:  NLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        NL     S+EEY+ EFT++SRFA E++DTE  K  RFI+ L+D+ +  V  L P
Subjt:  NLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

A0A6J1EKD9 uncharacterized protein LOC1114354606.8e-0755.36Show/hide
Query:  EGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL
        E   +L     ++EEYELEFTR+SRFA E +DTEEK+T +FILGLR ++Q  V A+
Subjt:  EGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGAL

A0A6J1HAS0 uncharacterized protein LOC1114621206.4e-0539.68Show/hide
Query:  QVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP
        Q+++ +   +LV R  ++E+Y  EF ++ RFA  M+DTEEK T +F+LGL   ++R++ A  P
Subjt:  QVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACGATTGAGGAGATCTTTCGCTACATGGGATGCCCCGAGGCCTATTCAAGGAAGCATTCTTCCAGAAGTATCACTCAGCCATTATCAGGTACAGAAAGGAGAAGG
AATTCCTAACCTTGTCGCAAGGAGAGAATCAATAGAAGAATACGAGCTAGAGTTCACCCGAGTGTCCCGTTTCGCCCATGAAATGTTGGATACGGAGGAAAAGAAAACAA
ATCGGTTCATCTTGGGCCTCAGAGATGACGTCCAGAGGGTCGTTGGAGCCCTTGGCCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCACGATTGAGGAGATCTTTCGCTACATGGGATGCCCCGAGGCCTATTCAAGGAAGCATTCTTCCAGAAGTATCACTCAGCCATTATCAGGTACAGAAAGGAGAAGG
AATTCCTAACCTTGTCGCAAGGAGAGAATCAATAGAAGAATACGAGCTAGAGTTCACCCGAGTGTCCCGTTTCGCCCATGAAATGTTGGATACGGAGGAAAAGAAAACAA
ATCGGTTCATCTTGGGCCTCAGAGATGACGTCCAGAGGGTCGTTGGAGCCCTTGGCCCATAG
Protein sequenceShow/hide protein sequence
MPRLRRSFATWDAPRPIQGSILPEVSLSHYQVQKGEGIPNLVARRESIEEYELEFTRVSRFAHEMLDTEEKKTNRFILGLRDDVQRVVGALGP