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Lag0031976 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0031976
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr11:21544680..21545631
RNA-Seq ExpressionLag0031976
SyntenyLag0031976
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW23791.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.0e-0680Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR AM AEL AME N TWS+VSLPK KHSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

RVW99848.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-0680Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR AM AEL AME N TWS+VSLPK KHSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

XP_020255452.1 uncharacterized protein LOC109832512 [Asparagus officinalis]6.1e-0732.17Show/hide
Query:  TTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTMVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTHAGNYS
        TTP     HQ + + Q   EI    +    +   P     +  D++  +V +   K  T+   +    YSH S   R  V ++   +  T VT    N S
Subjt:  TTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTMVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTHAGNYS

Query:  HQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
               Q WR AMA EL+A+E N TW +  LP  KH+IGCKW
Subjt:  HQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

XP_022150855.1 uncharacterized protein LOC111018899 [Momordica charantia]1.0e-0654.9Show/hide
Query:  TTHAGNYSHQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        TT    + HQ+    +HWR +MAAEL AM+DN  WS+ SLP +KH+IGCKW
Subjt:  TTHAGNYSHQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

XP_022154919.1 uncharacterized protein LOC111022065 [Momordica charantia]3.6e-0777.14Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR+AM AEL AME NHTWS+V LP E HSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

TrEMBL top hitse value%identityAlignment
A0A2N9EQ05 Reverse transcriptase Ty1/copia-type domain-containing protein2.9e-0746.99Show/hide
Query:  MVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTHAGNYSHQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        M+T+   + S  SD   Q   S Q  L T +       + HQ+  S Q WRDAM AEL A+E NHTWS+ SLP  K SIGCKW
Subjt:  MVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTHAGNYSHQSDWSRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

A0A438CKS1 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-0780Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR AM AEL AME N TWS+VSLPK KHSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

A0A438IT12 Retrovirus-related Pol polyprotein from transposon RE15.0e-0780Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR AM AEL AME N TWS+VSLPK KHSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

A0A6J1DNP7 uncharacterized protein LOC1110220651.7e-0777.14Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR+AM AEL AME NHTWS+V LP E HSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

A5C102 Integrase catalytic domain-containing protein5.0e-0780Show/hide
Query:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW
        HWR AM AEL AME N TWS+VSLPK KHSIGCKW
Subjt:  HWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGT
GACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCATGGTGACCACCCCTGCAGGAAACT
ACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCATGCAGGAAACTACAGTCATCAAAGTGACTGG
TCTAGACAGCATTGGAGGGATGCTATGGCTGCTGAATTGAAGGCCATGGAGGACAACCACACTTGGTCCATTGTTTCCCTTCCTAAAGAGAAACATTCCATCGGTTGCAA
GTGGTCTATAGGATCAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGT
GACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCATGGTGACCACCCCTGCAGGAAACT
ACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGCTGATGACGACCGTGGTGACCACCCATGCAGGAAACTACAGTCATCAAAGTGACTGG
TCTAGACAGCATTGGAGGGATGCTATGGCTGCTGAATTGAAGGCCATGGAGGACAACCACACTTGGTCCATTGTTTCCCTTCCTAAAGAGAAACATTCCATCGGTTGCAA
GTGGTCTATAGGATCAACATAA
Protein sequenceShow/hide protein sequence
MTTVVTTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTMVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTHAGNYSHQSDW
SRQHWRDAMAAELKAMEDNHTWSIVSLPKEKHSIGCKWSIGST