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Lag0032007 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032007
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationchr11:22477683..22478672
RNA-Seq ExpressionLag0032007
SyntenyLag0032007
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]4.0e-5080.29Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKA  KASKPSSRKTKSPANSA+LGS  VQPAAL+SHGSLDLQ           DYG SEN +RQFDMN AYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]1.9e-5282.48Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKA  KASKPSSRKTKSPANSA+LGS  VQPAAL+SHGSLDLQ           DYGESENM+RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]5.4e-4778.1Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGGMKDFYKQRK SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHGSLDL         RD DYGESEN++RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_023532644.1 uncharacterized protein LOC111794744 [Cucurbita pepo subsp. pepo]1.6e-4677.37Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGGMKDFYKQRK SG+S    K SKPSSRKTKS ANSATL S GVQPA LISHGSLDL         RD DYGESEN++RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]5.0e-5382.48Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKAN+KASKPSSRK KSPANSA+LGS  VQPAALISHGSLDLQ           DYG  ENM+RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERACNLGLNPPKDIETLLKA KVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein1.9e-5080.29Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKA  KASKPSSRKTKSPANSA+LGS  VQPAAL+SHGSLDLQ           DYG SEN +RQFDMN AYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 49.2e-5382.48Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKA  KASKPSSRKTKSPANSA+LGS  VQPAAL+SHGSLDLQ           DYGESENM+RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 49.2e-5382.48Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGG+KDFYKQRK SGISKA  KASKPSSRKTKSPANSA+LGS  VQPAAL+SHGSLDLQ           DYGESENM+RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        M RWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591432.6e-4778.1Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGGMKDFYKQRK SG+S    K SKPSSRKTKS ANSATL S GVQPAALISHGSLDL         RD DYGESEN++RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911826.4e-4676.64Show/hide
Query:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR
        MAS RGGMKDFYKQRK SG+S    K SKPSS KTKS A+SATL S GVQPAALISHGSLDL         RD DYGESEN++RQFDMNMAYGPCLGMTR
Subjt:  MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTR

Query:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MERWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 42.8e-0651.16Show/hide
Query:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL
        E ++  FD    YGP LGMTRM+RW+RA N  LNPP+ +  +L
Subjt:  ENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 41.8e-0842.03Show/hide
Query:  EFVPRDYDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        E +P   D  E E ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +L++  G  + +C LW
Subjt:  EFVPRDYDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 41.5e-0751.16Show/hide
Query:  MVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA
        ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LKA
Subjt:  MVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 44.6e-0945.45Show/hide
Query:  PRDYDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        PRD +  E E ++RQFD+   YGPC G+TR++RW RA  +GL PP ++  +LK   G  + +C LW
Subjt:  PRDYDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 41.6e-3355.71Show/hide
Query:  MASVRGGMKDFYKQRKKS---GISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLG
        MA+    +K FYKQ K +   GISK     SKPSSRK  +P ++A  GS   QPAALISHGS+DL          + DY + E M+RQFDMN+ YGPCLG
Subjt:  MASVRGGMKDFYKQRKKS---GISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLG

Query:  MTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MTR++RWERA  LG+NPP +IE LLK GKVQ +CLW  RV
Subjt:  MTRMERWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAGGAAAAAGAGTGGAATCTCCAAAGCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCCAACTCTGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTCCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGTGATT
ATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCTTGTAATCTT
GGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGGTTCGAGGAGGTATGAAAGATTTCTACAAGCAAAGGAAAAAGAGTGGAATCTCCAAAGCCAACAACAAGGCTTCAAAGCCCTCTTCTAGGAAAACCAAATC
TCCGGCCAACTCTGCAACTTTGGGCTCCGGTGGCGTCCAACCGGCGGCTCTTATTTCTCACGGCTCCCTGGATCTTCAAGTTACTGTTGTGGAGTTTGTGCCTCGTGATT
ATGATTATGGTGAGTCTGAGAATATGGTGAGGCAATTTGACATGAACATGGCCTATGGACCTTGCCTTGGAATGACCAGAATGGAACGGTGGGAGCGTGCTTGTAATCTT
GGTTTGAACCCTCCAAAAGACATTGAGACACTCTTAAAGGCCGGCAAAGTGCAGTTAGAGTGCTTGTGGGATTCCCGAGTTTAA
Protein sequenceShow/hide protein sequence
MASVRGGMKDFYKQRKKSGISKANNKASKPSSRKTKSPANSATLGSGGVQPAALISHGSLDLQVTVVEFVPRDYDYGESENMVRQFDMNMAYGPCLGMTRMERWERACNL
GLNPPKDIETLLKAGKVQLECLWDSRV