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Lag0032022 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032022
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag-pro-like protein
Genome locationchr11:22697077..22698294
RNA-Seq ExpressionLag0032022
SyntenyLag0032022
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.1e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL  PA+RWYMQLDSSHV +WKNLADSFLKQYKHNID+APDRLDLQRMEKKSTE FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]4.1e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL GPA+RWYMQLDSSHV +WKNLADSFLKQYKHNID+APDRLDLQRMEKKST+ FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]4.0e-2937.3Show/hide
Query:  TDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDMPVGQYPFPHLKKAK---------------SP---------------------------
        +  PI  PQ   P+PP +   +R  AE  MPQ+TTYNPLYD+P+GQYP   +K A+               SP                           
Subjt:  TDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDMPVGQYPFPHLKKAK---------------SP---------------------------

Query:  -----------------------------------KSPWLTKL--------------------------------DSLKGPAARWYMQLDSSHVVTWKNL
                                           K P   K                                 DSL G A+RWYMQLDSSHV +WKNL
Subjt:  -----------------------------------KSPWLTKL--------------------------------DSLKGPAARWYMQLDSSHVVTWKNL

Query:  ADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        ADSFLKQYKHNID+APDRLDLQRMEK STE FK+YAQRW DT A
Subjt:  ADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]9.2e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL GPA+RWYMQLDSS+V +WKNLADSFLKQYKHNID+APDRLDLQRMEKKSTE FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.3e-2732.86Show/hide
Query:  IKIMARRARGFAEWARDLRENTSPMASNAEELFEFLGMIRKDLGY-----------------DCTDTPIGNPQAGLPFPPSFA-SHVRTTAEASMPQHTT
        ++I++RRA GFAEWA DLR N   +  ++++L  FL MI ++LG+                   TD PI        +PP F   H+  T   +   +  
Subjt:  IKIMARRARGFAEWARDLRENTSPMASNAEELFEFLGMIRKDLGY-----------------DCTDTPIGNPQAGLPFPPSFA-SHVRTTAEASMPQHTT

Query:  YNPLYDMP-----------------VGQ---------------------------------------------YPFPHLKKAKSPKSP------WLTKL-
         NPL+D+P                 +GQ                                             +  P   K      P      +  K+ 
Subjt:  YNPLYDMP-----------------VGQ---------------------------------------------YPFPHLKKAKSPKSP------WLTKL-

Query:  --------------DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
                      DSL GPA RWY+QLD++H+  WK+LAD+FLKQYKHNID+APDRLDLQRMEKKS+E FK+YAQRW D  A
Subjt:  --------------DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

TrEMBL top hitse value%identityAlignment
A0A5A7V3W7 Retrotrans_gag domain-containing protein2.7e-2375.36Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL GPA+RWY+QLD++H+  WK+LAD+FLKQYKHNID+AP+RLDLQRMEKKS+E FK+YAQRW D TA
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

A0A6J1CNY7 Ribonuclease H3.4e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL  PA+RWYMQLDSSHV +WKNLADSFLKQYKHNID+APDRLDLQRMEKKSTE FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

A0A6J1D099 Ribonuclease H2.0e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL GPA+RWYMQLDSSHV +WKNLADSFLKQYKHNID+APDRLDLQRMEKKST+ FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

A0A6J1DZ90 Ribonuclease H1.9e-2937.3Show/hide
Query:  TDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDMPVGQYPFPHLKKAK---------------SP---------------------------
        +  PI  PQ   P+PP +   +R  AE  MPQ+TTYNPLYD+P+GQYP   +K A+               SP                           
Subjt:  TDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDMPVGQYPFPHLKKAK---------------SP---------------------------

Query:  -----------------------------------KSPWLTKL--------------------------------DSLKGPAARWYMQLDSSHVVTWKNL
                                           K P   K                                 DSL G A+RWYMQLDSSHV +WKNL
Subjt:  -----------------------------------KSPWLTKL--------------------------------DSLKGPAARWYMQLDSSHVVTWKNL

Query:  ADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        ADSFLKQYKHNID+APDRLDLQRMEK STE FK+YAQRW DT A
Subjt:  ADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

A0A6J1E2J7 Ribonuclease H4.5e-2685.51Show/hide
Query:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA
        DSL GPA+RWYMQLDSS+V +WKNLADSFLKQYKHNID+APDRLDLQRMEKKSTE FK+YAQRW DT A
Subjt:  DSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACTATCAAGATCATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGCAGAGGAGTTGTTTGA
GTTTTTAGGGATGATTCGTAAAGACCTTGGATACGACTGCACCGACACTCCGATTGGAAACCCTCAAGCTGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTA
CGACAGCAGAAGCGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATGCCTGTTGGGCAATACCCTTTTCCACATTTAAAGAAGGCCAAATCCCCCAAATCC
CCATGGCTAACCAAGCTGGACAGCCTAAAAGGTCCAGCTGCTCGTTGGTATATGCAGCTGGATAGTTCACATGTTGTCACATGGAAGAACTTGGCTGATTCCTTCCTCAA
ACAATACAAGCACAATATTGATTTGGCTCCCGACCGACTGGACCTACAGAGGATGGAAAAGAAGAGTACTGAAGACTTCAAGGATTATGCTCAAAGGTGGTGGGATACGA
CAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACACTATCAAGATCATGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTTCGAGAGAATACATCACCTATGGCCTCTAATGCAGAGGAGTTGTTTGA
GTTTTTAGGGATGATTCGTAAAGACCTTGGATACGACTGCACCGACACTCCGATTGGAAACCCTCAAGCTGGCCTACCATTTCCACCCAGTTTCGCTTCACATGTTCGTA
CGACAGCAGAAGCGTCCATGCCACAACATACTACCTATAACCCCTTATATGACATGCCTGTTGGGCAATACCCTTTTCCACATTTAAAGAAGGCCAAATCCCCCAAATCC
CCATGGCTAACCAAGCTGGACAGCCTAAAAGGTCCAGCTGCTCGTTGGTATATGCAGCTGGATAGTTCACATGTTGTCACATGGAAGAACTTGGCTGATTCCTTCCTCAA
ACAATACAAGCACAATATTGATTTGGCTCCCGACCGACTGGACCTACAGAGGATGGAAAAGAAGAGTACTGAAGACTTCAAGGATTATGCTCAAAGGTGGTGGGATACGA
CAGCTTAG
Protein sequenceShow/hide protein sequence
MNTIKIMARRARGFAEWARDLRENTSPMASNAEELFEFLGMIRKDLGYDCTDTPIGNPQAGLPFPPSFASHVRTTAEASMPQHTTYNPLYDMPVGQYPFPHLKKAKSPKS
PWLTKLDSLKGPAARWYMQLDSSHVVTWKNLADSFLKQYKHNIDLAPDRLDLQRMEKKSTEDFKDYAQRWWDTTA