CuGenDBv2

Gene ID	Lag0032025
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	rRNA processing protein-related
Genome location	chr11:22754710..22755072
RNA-Seq Expression	Lag0032025
Synteny	Lag0032025
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0034399 - nuclear periphery (cellular component)
InterPro domains	IPR008610 - Eukaryotic rRNA processing

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055124.1 putative rRNA-processing protein EBP2-like protein [Cucumis melo var. makuwa]

6.4e-44

90.18

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

KAG7035578.1 putative rRNA-processing protein EBP2-like protein [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-44

90.99

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNA+YNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

XP_008467285.1 PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo]

1.1e-43

90.18

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

XP_022926294.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]

2.0e-45

88.79

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL
        MGVSDKDARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIYNADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL

Query:  ARELAFYTQALQGTRM
        ARELAFYTQALQGTRM
Subjt:  ARELAFYTQALQGTRM

XP_022958567.1 probable rRNA-processing protein EBP2 homolog [Cucurbita moschata]

9.8e-45

91.89

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CT69 probable rRNA-processing protein EBP2 homolog

5.3e-44

90.18

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

A0A5D3DB33 Putative rRNA-processing protein EBP2-like protein

3.1e-44

90.18

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL
        MGVS KDA FLNEDT+EDDDL SEDS+F SES S SES EEEEDV+LSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLT DIDQEKEVDVNDDLAREL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLAREL

Query:  AFYTQALQGTRM
        AFYTQALQGTRM
Subjt:  AFYTQALQGTRM

A0A6J1EEP4 probable rRNA-processing protein EBP2 homolog

9.6e-46

88.79

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL
        MGVSDKDARFLNEDTMEDDDLG+EDSDFGSES SESES     EEEE+VKLSEPSK AIYNADGLLDKL DISWP+NVEWIH+L LDIDQEKEVDVNDDL
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESES-----EEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDL

Query:  ARELAFYTQALQGTRM
        ARELAFYTQALQGTRM
Subjt:  ARELAFYTQALQGTRM

A0A6J1H264 probable rRNA-processing protein EBP2 homolog

4.8e-45

91.89

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   FLNEDTMEDDDL SEDSDFGSE  SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

A0A6J1K7Q8 probable rRNA-processing protein EBP2 homolog

9.0e-44

89.19

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Query:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA
        MGVSD+   F+NEDTMEDDDL SEDSDFG    SESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENV WIHKL+LDIDQEKEVDVNDDLARELA
Subjt:  MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELA

Query:  FYTQALQGTRM
        FYTQALQGTRM
Subjt:  FYTQALQGTRM

SwissProt top hits

e value

%identity

Alignment

Q9LUJ5 Probable rRNA-processing protein EBP2 homolog

1.4e-25

61.54

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Query:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL
        L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL DISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Subjt:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL

Query:  QGTR
        +GTR
Subjt:  QGTR

Arabidopsis top hits

e value

%identity

Alignment

AT3G22660.1 rRNA processing protein-related

9.9e-27

61.54

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Query:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL
        L ED + DD++   D    +D  +ES S+S++E E   KL+EP+K AIYN DGLLDKL DISWPE+V+W HKLT++IDQ   VDVNDDLARE AFYTQAL
Subjt:  LNEDTMEDDDLGSED----SDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQAL

Query:  QGTR
        +GTR
Subjt:  QGTR

Sequences

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CDS sequence

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ATGGGTGTATCAGATAAAGATGCTAGATTCTTAAATGAGGACACAATGGAAGATGATGATCTTGGTAGCGAGGATTCAGATTTTGGATCTGAATCTGCATCTGAATCTGA
ATCTGAGGAGGAAGAGGATGTAAAATTATCTGAACCATCAAAGAATGCAATATATAATGCTGATGGTCTCCTTGATAAGCTTGGAGATATTAGCTGGCCCGAAAACGTGG
AATGGATACACAAGCTAACTCTTGATATTGATCAAGAAAAAGAGGTGGATGTGAATGATGATCTAGCTAGAGAGCTTGCATTCTATACACAGGCTTTGCAGGGGACAAGA
ATGGTGAAGGATTGGAATTCCGTAATTCCGTAA

mRNA sequence

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Protein sequence

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MGVSDKDARFLNEDTMEDDDLGSEDSDFGSESASESESEEEEDVKLSEPSKNAIYNADGLLDKLGDISWPENVEWIHKLTLDIDQEKEVDVNDDLARELAFYTQALQGTR
MVKDWNSVIP

Lag0032025 (gene) of Sponge gourd (AG-4) v1 genome