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Lag0032027 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032027
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr11:22804055..22804372
RNA-Seq ExpressionLag0032027
SyntenyLag0032027
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037230.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1352.17Show/hide
Query:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        T  DRSK+K+LEM +F G NP SW +R + +F+I+ L E EK+   ++S  +  VDWY WSHNRKK+KS
Subjt:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-1351.52Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW +R + +F+I+ L+E EK+   ++S  +  VDWY WSHNRKK++S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

KAA0065941.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-1353.03Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW +R + +FKI+ L E EK+   ++S  +  VDWY WSHNRKK++S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

TYK15104.1 syndetin [Cucumis melo var. makuwa]3.9e-1354.55Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW  R + +FKI+ L E EK+   ++S  +  VDWY WSHNRKKI+S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]7.9e-1450.72Show/hide
Query:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        T GDRSK+K+LEM +F G NP SW +R + +F+I+ L E EK+   ++S  +  VDWY WSHNR+K++S
Subjt:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

TrEMBL top hitse value%identityAlignment
A0A5A7T1J0 Retrotransposon protein8.5e-1452.17Show/hide
Query:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        T  DRSK+K+LEM +F G NP SW +R + +F+I+ L E EK+   ++S  +  VDWY WSHNRKK+KS
Subjt:  TRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

A0A5A7UYM1 Ty3/gypsy retrotransposon protein1.9e-1351.52Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW +R + +F+I+ L+E EK+   ++S  +  VDWY WSHNRKK++S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

A0A5A7VC68 Syndetin1.9e-1354.55Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW  R + +FKI+ L E EK+   ++S  +  VDWY WSHNRKKI+S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

A0A5D3CVZ5 Syndetin1.9e-1354.55Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW  R + +FKI+ L E EK+   ++S  +  VDWY WSHNRKKI+S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

A0A5D3E4T6 Retrotransposon protein1.1e-1353.03Show/hide
Query:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS
        DRSK+K+LEM +F G NP SW +R + +FKI+ L E EK+   ++S  +  VDWY WSHNRKK++S
Subjt:  DRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGAGGAGTTGAGTCAAAAAGGGAAAGAAATAGAAGAGGTCACCGAAAATGTGGAAAAATCAGGGTGGGTAGGTTGCAAAGGAGCGCTGATTCAAACGAGGGGAGA
CCGCAGCAAGTTCAAGCAGTTGGAAATGTCTGTCTTCACGGGTGTCAATCCAAATTCATGGTTCTTCAGAACTAAAAGGTATTTCAAGATTCATCAGCTTACCGAATGGG
AGAAGATCACTGCGACTATCATCAGCTCCGATGAGTATGTGGTAGATTGGTATCATTGGTCTCACAATCGCAAGAAAATTAAATCTGGGATGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAGAGGAGTTGAGTCAAAAAGGGAAAGAAATAGAAGAGGTCACCGAAAATGTGGAAAAATCAGGGTGGGTAGGTTGCAAAGGAGCGCTGATTCAAACGAGGGGAGA
CCGCAGCAAGTTCAAGCAGTTGGAAATGTCTGTCTTCACGGGTGTCAATCCAAATTCATGGTTCTTCAGAACTAAAAGGTATTTCAAGATTCATCAGCTTACCGAATGGG
AGAAGATCACTGCGACTATCATCAGCTCCGATGAGTATGTGGTAGATTGGTATCATTGGTCTCACAATCGCAAGAAAATTAAATCTGGGATGATCTAA
Protein sequenceShow/hide protein sequence
MTEELSQKGKEIEEVTENVEKSGWVGCKGALIQTRGDRSKFKQLEMSVFTGVNPNSWFFRTKRYFKIHQLTEWEKITATIISSDEYVVDWYHWSHNRKKIKSGMI