CuGenDBv2

Gene ID	Lag0032030
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr11:22861698..22868601
RNA-Seq Expression	Lag0032030
Synteny	Lag0032030
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048376.1 uncharacterized protein E6C27_scaffold264G00950 [Cucumis melo var. makuwa]

2.1e-50

89.57

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

2.1e-50

90.43

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

2.1e-50

90.43

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

2.1e-50

90.43

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

2.1e-50

90.43

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEVYTNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

6.6e-50

87.83

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MA+QEGLTTEDNARLRL+ELEALDE+RLEAQQALECYQARMSKAFDK V+ RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

A0A5A7U2B8 Reverse transcriptase

1.0e-50

89.57

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK VK RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

A0A5A7UD71 Uncharacterized protein

5.1e-50

88.7

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MA+QEGLTTEDNARLRLQELEALDE+RL+AQQALECYQARMSKAFDK V+ RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGLRIGPING  L+
Subjt:  KDGLRIGPINGSSLQ

A0A5A7V098 Uncharacterized protein

8.7e-50

88.7

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MAVQEGLTTEDN +LRLQELEALDE+RLEAQQALECYQARMSKAFDK+VK RSFQVGDLVLAVRRPIITTRH GNK TPKWDGPY+VKEVYTNGAYKIVD
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGL+IGPING  L+
Subjt:  KDGLRIGPINGSSLQ

A0A5D3D1E5 Ribonuclease H

6.6e-50

87.83

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Query:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD
        MA+QEGLTTEDNARLRLQELEALDE+RLEAQQALECYQARMSKAFDK V+ RSFQVGDLVLAVRRPIITTRHTGNK TPKWDGPY+VKEV+TNGAYKI+D
Subjt:  MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVD

Query:  KDGLRIGPINGSSLQ
        +DGL+IGPING  L+
Subjt:  KDGLRIGPINGSSLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTGTCCAAGAAGGGTTGACAACAGAAGATAATGCTAGGTTGCGCCTTCAGGAGTTAGAAGCACTTGATGAAAGAAGGTTAGAGGCTCAACAAGCATTGGAATGCTA
CCAAGCACGGATGTCTAAAGCCTTTGACAAGAATGTGAAGCTTCGATCTTTTCAAGTTGGTGATCTTGTGCTAGCTGTTCGAAGACCCATCATCACGACACGACACACAG
GGAACAAGTTAACACCTAAATGGGATGGACCCTACGTCGTCAAGGAAGTCTACACAAATGGAGCGTACAAGATCGTGGATAAAGACGGATTAAGAATAGGCCCGATAAAT
GGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTG
TTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAA
GTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAATTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTCGCTG
CGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGT
TCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGTTCAAAGGTTCTCACGCG
CTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTC
GTTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGTGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCTTTCACGCGCTGCTGCA
GCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCT
CCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTT
CATCTTCAAATGTTGGCAGTTGACGGCGTTCGCTTCGCTTCATCTTCAAAAATTGACTGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCC
TGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGACAGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACA
GTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCATGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTG
ACCACCCCTGCAGGAAACTACAGTCATCAAAGTGAATGGTCTAGACAGGTGGTGAAATCACTGAAAGTGAAGCTGATGACGATCGTGGTGACCACCCCTGTAGGAAACTA
CAGTCATCAAAGTGACTGGTCTAGACAGTTTCAAAGTGCTGAACACTTCCTGAAGACTGAAGACTCCTTCAAGATTTGGAAGACTTCAAGCTCCAAGAATCCGTTGAAGC
TCCAGACTCGAGATCAAGCGTTCCAGCCCTCGAATCAGTATAACTTGTTCGTTGAATTGCAAGGTTGTTGCTGTCAAGATGGTCAGTTGAAAAAGATGGCATTACGAGTT
TACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTATTGGGGTGGGAATTCTGGGG
TCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGAAGAATTTCCACTACATGAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTC
ACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGAC
CCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

mRNA sequence

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Protein sequence

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MAVQEGLTTEDNARLRLQELEALDERRLEAQQALECYQARMSKAFDKNVKLRSFQVGDLVLAVRRPIITTRHTGNKLTPKWDGPYVVKEVYTNGAYKIVDKDGLRIGPIN
GSSLQFLLSKFEGPYTVRYCVVPSPSSKVLRCILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPNSKVLTRSVAVPSFKVEGSHSL
RCSSFSPSSKVHALRCSSFSQIRRFSRASLCNSFPQVRRFSRASLQFLPPSSKVLTRFGEVPSSKSEVQRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRF
VAVPSSKFEVPSSKFEGSRALRCSFLQVRRFFHALLQLLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPL
HLQMLAVDGVRFASSSKIDCGEITASEKLMTTVVTTPAGNYSHQSDWSRQTGGEITASEKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKADDDHGGEITASEKLMTTVV
TTPAGNYSHQSEWSRQVVKSLKVKLMTIVVTTPVGNYSHQSDWSRQFQSAEHFLKTEDSFKIWKTSSSKNPLKLQTRDQAFQPSNQYNLFVELQGCCCQDGQLKKMALRV
YRTVLLFPNSSVSLALQDCVVGLLFTLFPVLGWEFWGQAMKEFRVEVEAIGHDQAEKNFHYMSVLMSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHD
PSERNSTTSNNIKFPSSSETEFSMAKSLPPWRRL

Lag0032030 (gene) of Sponge gourd (AG-4) v1 genome