| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-71 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| KAA0033228.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-72 | 70.53 | Show/hide |
Query: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQKV
DKD WVKAMDLE+ES+YFNS+W+LVD PEG++ IGCKWIYKRKRD+ G KTAFLNGNLEE+IFMS+P+GFI QGQEQKV
Subjt: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQKV
Query: CN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNC
C GLKQA RSWNIRFDTAIKSY+FDQNVDE VYKKI V FLVLYVDDILLIG N+VGYLTD+K WLA QFQMKDLGEAQYVLGIQIIR+
Subjt: CN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNC
Query: KNRTLAL
KN+TLAL
Subjt: KNRTLAL
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-71 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| KAA0062410.1 gag/pol protein [Cucumis melo var. makuwa] | 4.9e-72 | 69.38 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQK
+DKDQWVKAMDL+MES+YFNS+W+LVD PEG+K IGCKWIYKRK+D+ G KTAFLN NLEE+IFMS+P+GFI QGQEQK
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQK
Query: VCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRN
VC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VGYLTD+K WLA QFQMKDLGE QYVLGIQIIR+
Subjt: VCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRN
Query: CKNRTLALS
KN+ LALS
Subjt: CKNRTLALS
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| TYK15984.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-71 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SRR6 Gag/pol protein | 6.2e-73 | 70.53 | Show/hide |
Query: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQKV
DKD WVKAMDLE+ES+YFNS+W+LVD PEG++ IGCKWIYKRKRD+ G KTAFLNGNLEE+IFMS+P+GFI QGQEQKV
Subjt: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQKV
Query: CN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNC
C GLKQA RSWNIRFDTAIKSY+FDQNVDE VYKKI V FLVLYVDDILLIG N+VGYLTD+K WLA QFQMKDLGEAQYVLGIQIIR+
Subjt: CN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNC
Query: KNRTLAL
KN+TLAL
Subjt: KNRTLAL
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| A0A5A7TZD0 Gag/pol protein | 5.3e-72 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| A0A5A7UYE8 Gag/pol protein | 5.3e-72 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| A0A5D3CYF4 Gag/pol protein | 5.3e-72 | 63.07 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
+DKDQWVKAMDLEMES+YFNSVW+LVD PEG+K IGCKWIYKRKRD+ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG---------------------------------------------------
Query: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNGNLEE+IFMS+PEGFI QGQEQKVC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VG
Subjt: ---KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
YLTD+K WLA QFQMKDLGEAQYVLGIQIIR+ KN+TLALS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| A0A5D3DS50 Gag/pol protein | 2.4e-72 | 69.38 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQK
+DKDQWVKAMDL+MES+YFNS+W+LVD PEG+K IGCKWIYKRK+D+ G KTAFLN NLEE+IFMS+P+GFI QGQEQK
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------KTAFLNGNLEETIFMSRPEGFIAQGQEQK
Query: VCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRN
VC GLKQA RSWNIRFDTAIKSY FDQNVDE VYKKI V FLVLYVDDILLIG N+VGYLTD+K WLA QFQMKDLGE QYVLGIQIIR+
Subjt: VCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRN
Query: CKNRTLALS
KN+ LALS
Subjt: CKNRTLALS
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.7e-14 | 24.89 | Show/hide |
Query: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------------------------------------
DK W +A++ E+ + N+ W + +PE + +W++ K + +G
Subjt: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDAVG----------------------------------------------------
Query: --KTAFLNGNLEETIFMSRPEGFIAQGQE----QKVCNGLKQAFRSWNIRFDTAIKSYNFDQNVDESRVY---KKIINNSVEFLVLYVDDILLIGNNNVG
KTAFLNG L+E I+M P+G K GLKQA R W F+ A+K F + + +Y K IN ++ +++LYVDD+ +I ++
Subjt: --KTAFLNGNLEETIFMSRPEGFIAQGQE----QKVCNGLKQAFRSWNIRFDTAIKSYNFDQNVDESRVY---KKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQI
+ + K +L +F+M DL E ++ +GI+I
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.5e-28 | 33.2 | Show/hide |
Query: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDA------------------------------------------------------
+K+Q +KAM EMES+ N + LV+ P+G + + CKW++K K+D
Subjt: DKDQWVKAMDLEMESIYFNSVWDLVDQPEGIKAIGCKWIYKRKRDA------------------------------------------------------
Query: VGKTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVY-KKIINNSVEFLVLYVDDILLIGNNNVG
KTAFL+G+LEE I+M +PEGF G++ VC GLKQA R W ++FD+ +KS + + + VY K+ N+ L+LYVDD+L++G + G
Subjt: VGKTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVY-KKIINNSVEFLVLYVDDILLIGNNNVG
Query: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
+ +K L+ F MKDLG AQ +LG++I+R +R L LS
Subjt: YLTDIKTWLAVQFQMKDLGEAQYVLGIQIIRNCKNRTLALS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.7e-15 | 25.33 | Show/hide |
Query: DQWVKAMDLEMESIYFNSVWDLVDQPEG-IKAIGCKWIYKRKRDAVG-----------------------------------------------------
++W AM E+ + N WDLV P + +GC+WI+ +K ++ G
Subjt: DQWVKAMDLEMESIYFNSVWDLVDQPEG-IKAIGCKWIYKRKRDAVG-----------------------------------------------------
Query: -KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYL
AFL G L + ++MS+P GFI + + VC GLKQA R+W + + + F +V ++ ++ S+ ++++YVDDIL+ GN+ L
Subjt: -KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNVGYL
Query: TDIKTWLAVQFQMKDLGEAQYVLGIQIIR
+ L+ +F +KD E Y LGI+ R
Subjt: TDIKTWLAVQFQMKDLGEAQYVLGIQIIR
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.2e-15 | 25 | Show/hide |
Query: MDKDQWVKAMDLEMESIYFNSVWDLV-DQPEGIKAIGCKWIYKRKRDAVG--------------------------------------------------
M D+W +AM E+ + N WDLV P + +GC+WI+ +K ++ G
Subjt: MDKDQWVKAMDLEMESIYFNSVWDLV-DQPEGIKAIGCKWIYKRKRDAVG--------------------------------------------------
Query: ----KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNV
AFL G L + ++MS+P GF+ + + VC GLKQA R+W + T + + F ++ ++ ++ S+ ++++YVDDIL+ GN+ V
Subjt: ----KTAFLNGNLEETIFMSRPEGFIAQGQEQKVCN------GLKQAFRSWNIRFDTAIKSYNFDQNVDESRVYKKIINNSVEFLVLYVDDILLIGNNNV
Query: GYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIR
L L+ +F +K+ + Y LGI+ R
Subjt: GYLTDIKTWLAVQFQMKDLGEAQYVLGIQIIR
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