; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032096 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032096
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr11:24494375..24494755
RNA-Seq ExpressionLag0032096
SyntenyLag0032096
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]8.0e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

KAA8518236.1 hypothetical protein F0562_015710 [Nyssa sinensis]7.2e-2248.7Show/hide
Query:  SSSSVSKAVSGSSLQPN---TSIFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALIT
        +S+S +   + +SL PN   + IFL+SNICNL+  RLD+SNY+ W+FQ+ S+LRAHSL   +DG+ P P KF++D  G   T +N  Y  W TQD+AL+T
Subjt:  SSSSVSKAVSGSSLQPN---TSIFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALIT

Query:  LINATLSKAAMRSVV
        L+NATLS+ A+  ++
Subjt:  LINATLSKAAMRSVV

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]8.0e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]8.0e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]8.0e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

TrEMBL top hitse value%identityAlignment
A0A5J4ZHB6 Uncharacterized protein3.9e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

A0A5J4ZKU4 Retrotran_gag_3 domain-containing protein3.5e-2248.7Show/hide
Query:  SSSSVSKAVSGSSLQPN---TSIFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALIT
        +S+S +   + +SL PN   + IFL+SNICNL+  RLD+SNY+ W+FQ+ S+LRAHSL   +DG+ P P KF++D  G   T +N  Y  W TQD+AL+T
Subjt:  SSSSVSKAVSGSSLQPN---TSIFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALIT

Query:  LINATLSKAAMRSVV
        L+NATLS+ A+  ++
Subjt:  LINATLSKAAMRSVV

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein3.9e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

A0A5J5B049 Retrotran_gag_3 domain-containing protein3.9e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein3.9e-2148.18Show/hide
Query:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT
        + + + +S  PN S   IFL+SNICNL+  RLD+SNY+ W+FQ+ S+L+AHSL   +DG+ P P KF++D  G +   +N  Y  W TQD+AL+TL+NAT
Subjt:  SKAVSGSSLQPNTS---IFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINAT

Query:  LSKAAMRSVV
        LS+ A+  V+
Subjt:  LSKAAMRSVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATGGCTTCTTCAATGGTAGTGTCTTCCTCAAGTGTCTCTAAAGCTGTATCTGGGTCCTCTCTTCAGCCTAATACCTCAATTTTTCTCGTATCCAACATTTGTAA
TCTTGTTCCCGTCCGCTTGGACGCCTCCAACTATCTTTTTTGGCGATTCCAAGTGGAATCTATGCTTCGAGCACACTCCTTATTTGACATTGTCGATGGATCAAAGCCCT
ACCCAGAGAAATTCTTGAAAGACAGTGATGGTAATTCCCTTACCACTGTCAACCTTGCCTACGATCAATGGATCACTCAGGATCGTGCACTCATTACACTGATCAACGCA
ACTCTATCGAAGGCCGCAATGAGATCGGTGGTTTTGCACCATTGGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATGGCTTCTTCAATGGTAGTGTCTTCCTCAAGTGTCTCTAAAGCTGTATCTGGGTCCTCTCTTCAGCCTAATACCTCAATTTTTCTCGTATCCAACATTTGTAA
TCTTGTTCCCGTCCGCTTGGACGCCTCCAACTATCTTTTTTGGCGATTCCAAGTGGAATCTATGCTTCGAGCACACTCCTTATTTGACATTGTCGATGGATCAAAGCCCT
ACCCAGAGAAATTCTTGAAAGACAGTGATGGTAATTCCCTTACCACTGTCAACCTTGCCTACGATCAATGGATCACTCAGGATCGTGCACTCATTACACTGATCAACGCA
ACTCTATCGAAGGCCGCAATGAGATCGGTGGTTTTGCACCATTGGATGTAA
Protein sequenceShow/hide protein sequence
MSMASSMVVSSSSVSKAVSGSSLQPNTSIFLVSNICNLVPVRLDASNYLFWRFQVESMLRAHSLFDIVDGSKPYPEKFLKDSDGNSLTTVNLAYDQWITQDRALITLINA
TLSKAAMRSVVLHHWM