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Lag0032114 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032114
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:25086584..25086997
RNA-Seq ExpressionLag0032114
SyntenyLag0032114
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-3154.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+  EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  I S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

KAA0046359.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-3156.59Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GRPPPPL+SYGDKKT N  +E  L E+DLA+ ALK +L   Q RMKK+AD K RE  F+V D ++LK+ PY Q+SLA++  EK +PK++GPY+I E I
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVG
        E VA  L L  +ASIH++FH+SQLK  +G
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVG

TYK16931.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-3254.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+C EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  + S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-3154.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+  EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  I S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

TYK23222.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.1e-3156.15Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GRPPPPL+SYGDKKT N  +E  L E+DLA+ ALK +L   Q RMKK+ D K RE  F+V D ++LK+ PY+Q+SLAK+  EK +PK++GPY I E I
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGK
          VA  L L  +ASIH++FH+SQLK  +GK
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGK

TrEMBL top hitse value%identityAlignment
A0A5A7SIV7 Ty3/gypsy retrotransposon protein1.5e-3154.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+  EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  I S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

A0A5A7TYN3 Ty3/gypsy retrotransposon protein9.0e-3256.59Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GRPPPPL+SYGDKKT N  +E  L E+DLA+ ALK +L   Q RMKK+AD K RE  F+V D ++LK+ PY Q+SLA++  EK +PK++GPY+I E I
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVG
        E VA  L L  +ASIH++FH+SQLK  +G
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVG

A0A5D3CXB1 Ty3/gypsy retrotransposon protein2.0e-3154.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+  EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  I S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

A0A5D3CY75 Ty3/gypsy retrotransposon protein8.1e-3354.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+C EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  + S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

A0A5D3DI73 Ty3/gypsy retrotransposon protein1.5e-3154.41Show/hide
Query:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI
        V GR PPPL+ YG+ +T N+TL+Q L ++D+ L ALK HL   QERMKK+AD K R+  F+  D + LK+ PY Q SL K+  EK SPK+FGPYKILERI
Subjt:  VEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERI

Query:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS
          VA  L+L   A+IH +FHVSQLK  +G +  I S
Subjt:  EAVANDLKLSLKASIHDMFHVSQLKCLVGKVSRIPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGGGGAGACCTCCACCTCCTCTTGTGTCATATGGGGACAAGAAAACAACCAACGCTACCCTAGAACAGTGGCTCATTGAACAAGATTTGGCCTTGTTAGCACT
TAAGAATCATCTTTGTGCGACCCAGGAGAGAATGAAGAAGTATGCAGACAAGAAACACAGGGAAGCTCACTTTGAGGTGTGTGACATGATACATCTAAAGATCTGGCCCT
ACTACCAAAAATCTCTTGCCAAGCGTTGTTGTGAAAAACATTCTCCTAAGCATTTCGGACCGTACAAGATATTGGAGAGGATTGAGGCAGTGGCTAACGACCTAAAACTT
TCCCTAAAAGCTTCGATCCATGATATGTTTCACGTATCACAGCTCAAGTGTTTGGTTGGGAAAGTTAGTAGGATTCCATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGGGGAGACCTCCACCTCCTCTTGTGTCATATGGGGACAAGAAAACAACCAACGCTACCCTAGAACAGTGGCTCATTGAACAAGATTTGGCCTTGTTAGCACT
TAAGAATCATCTTTGTGCGACCCAGGAGAGAATGAAGAAGTATGCAGACAAGAAACACAGGGAAGCTCACTTTGAGGTGTGTGACATGATACATCTAAAGATCTGGCCCT
ACTACCAAAAATCTCTTGCCAAGCGTTGTTGTGAAAAACATTCTCCTAAGCATTTCGGACCGTACAAGATATTGGAGAGGATTGAGGCAGTGGCTAACGACCTAAAACTT
TCCCTAAAAGCTTCGATCCATGATATGTTTCACGTATCACAGCTCAAGTGTTTGGTTGGGAAAGTTAGTAGGATTCCATCCTGA
Protein sequenceShow/hide protein sequence
MVEGRPPPPLVSYGDKKTTNATLEQWLIEQDLALLALKNHLCATQERMKKYADKKHREAHFEVCDMIHLKIWPYYQKSLAKRCCEKHSPKHFGPYKILERIEAVANDLKL
SLKASIHDMFHVSQLKCLVGKVSRIPS