; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032117 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032117
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:25197043..25201317
RNA-Seq ExpressionLag0032117
SyntenyLag0032117
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-1351.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-1351.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.8e-1351.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-1351.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0065984.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-1353.33Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYC
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS I SR     +    EG  TV  R+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYC

Query:  VVPSP
        +  +P
Subjt:  VVPSP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein5.0e-1451.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7TQ06 Retrotransposon gag protein8.5e-1451.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7U974 Retrotransposon gag protein1.1e-1351.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7VFA5 Ty3-gypsy retrotransposon protein1.9e-1353.33Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYC
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS I SR     +    EG  TV  R+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTV--RYC

Query:  VVPSP
        +  +P
Subjt:  VVPSP

A0A5D3BBF9 Gag protease polyprotein8.5e-1451.89Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCTGTCACGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGT
ATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTT
CCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAG
GTTCTCACTCGCTGCGTTACAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGTTTCGCTCTGCAAT
TCCTTCCCCCAAGTTCGAAGTTCCTTCCTCCAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCT
TCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCA
AATTCGAAGGTTTCGAAGGTTCTCAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCT
CTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTCTCTCCACTGTTCCTTCTCCAAGTT
CGAAGGTGCTTCTCTCCACTACTCCTTCTCCAAGTTCGATGGCGTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGA
AGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGAACTCAGTC
ATCAAAGTGACTGGTCTAGACAGGGTGAATCATGCAGAGCTGATACATGGTGACACCCCTGCAGGACTACAGTCATCAAAATTTGGAGACAGAGTCAGAGAACTCAGAGT
CCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGTCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAG
ATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCT
GATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGT
CAGCAGCCGATCATCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAATAGGTCGATCCAGG
AGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAATAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCAATCATCCAAGAAGATCAACAAGCCA
ATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCTGTCACGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGT
ATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTT
CCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAG
GTTCTCACTCGCTGCGTTACAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGTTTCGCTCTGCAAT
TCCTTCCCCCAAGTTCGAAGTTCCTTCCTCCAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCT
TCCTCCAAGTTTGAAGGTTCTCACATCGCTTCCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCA
AATTCGAAGGTTTCGAAGGTTCTCAGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTCCTTCCTCCAAGTTCGAAGGTTCT
CTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGTTCTCTCCACTGTTCCTTCTCCAAGTT
CGAAGGTGCTTCTCTCCACTACTCCTTCTCCAAGTTCGATGGCGTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGA
AGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTGAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGAACTCAGTC
ATCAAAGTGACTGGTCTAGACAGGGTGAATCATGCAGAGCTGATACATGGTGACACCCCTGCAGGACTACAGTCATCAAAATTTGGAGACAGAGTCAGAGAACTCAGAGT
CCAGAGCATTCTGCCAAGAGTCCAGAGTCGGCAGGTCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAG
ATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCT
GATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGT
CAGCAGCCGATCATCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAATAGGTCGATCCAGG
AGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAATAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCAATCATCCAAGAAGATCAACAAGCCA
ATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRSSLQFLLSKFEGPYTVRYCVVPSPSSKVLRC
ILLRCSFSKFEGSQLYDCYVVPPPSVKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFKVEGSHSLRYSSFSPSSKVHALRCSSFSQIRRFSRVSLCN
SFPQVRSSFLQFKGSHALRCSSFPQVEGSHVASLQFLPPSLKVLTSLPSRCASLQFLPPSSKVLTRFAAVPSSKFEGFEGSQRCDSLQFLPPSSKVLMRFVAPSSKFEGS
LTRCCSSFLQVRRFPHALRSLLLQVRRRSLHCSFSKFEGASLHYSFSKFDGVLSAAPSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLLKETTVIKVTGLDRNSV
IKVTGLDRVNHAELIHGDTPAGLQSSKFGDRVRELRVQSILPRVQSRQVRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQA
DPRDQQANRPIKKINKSAGRSSKRSTSQPTDQEDQQVSSRSSGRSTSQQADPRDHHANRPIIQEDQQANRSIQEIINLTGRSSKKINKSNRSIQEIINLTDQSSKKINKP
ISRSKRSSSQQADPRDHQPSKLII