CuGenDBv2

Gene ID	Lag0032152
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pol polyprotein
Genome location	chr11:26202507..26203686
RNA-Seq Expression	Lag0032152
Synteny	Lag0032152
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.0e-18

51.46

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q    GNKIS +KL ++ FLLWKFQ+LTALE ++LE  +  + + PP K  +S  +SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.4e-20

52.43

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q     NKIS +KL+++NFLLWKFQ+LTALE ++LE  +  + + PP K  +S G+SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.0e-18

51.46

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q    GNKIS +KL ++ FLLWKFQ+LTALE ++LE  +  + + PP K  +S  +SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.4e-20

52.43

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q     NKIS +KL+++NFLLWKFQ+LTALE ++LE  +  + + PP K  +S G+SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]

6.3e-21

54.84

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Query:  NQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESIL
        NQ +  +NPGNKISTIKL +ENFLLW+ Q+ TAL+GH L + I  + + P E +Q ++ +SSV  PNP +  WKRQDKL++SW++GSM+E IL
Subjt:  NQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.9e-19

51.46

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q    GNKIS +KL ++ FLLWKFQ+LTALE ++LE  +  + + PP K  +S  +SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

2.6e-20

52.43

Show/hide

Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q     NKIS +KL+++NFLLWKFQ+LTALE ++LE  +  + + PP K  +S G+SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.9e-19

51.46

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q    GNKIS +KL ++ FLLWKFQ+LTALE ++LE  +  + + PP K  +S  +SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

2.6e-20

52.43

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Query:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE
        N+E SS   + Q     NKIS +KL+++NFLLWKFQ+LTALE ++LE  +  + + PP K  +S G+SS S    PNP YK+WKRQD+L+SSW++GSM+E
Subjt:  NSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVS---KPNPNYKLWKRQDKLVSSWIVGSMTE

Query:  SIL
         IL
Subjt:  SIL

A0A6J1E314 uncharacterized protein LOC111025572

3.1e-21

54.84

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Query:  NQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESIL
        NQ +  +NPGNKISTIKL +ENFLLW+ Q+ TAL+GH L + I  + + P E +Q ++ +SSV  PNP +  WKRQDKL++SW++GSM+E IL
Subjt:  NQVTQAINPGNKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESIL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.9e-08

36.59

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Query:  NKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESI
        N  +  KLT  N+L+W  QV    +G+EL   +      PP  I    GT +  + NP+Y  WKRQDKL+ S ++G+++ S+
Subjt:  NKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.7e-08

37.8

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Query:  NKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESI
        N  +  KLT  N+L+W  QV    +G+EL   +      PP  I    GT +V + NP+Y  W+RQDKL+ S I+G+++ S+
Subjt:  NKISTIKLTEENFLLWKFQVLTALEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAGTTTATGAGAACTCAAGATTGTACAAATCGAAAACAAAACTGTTTCAGGATAATCAAAAAGTGCTCCTTTACAACTCTAAGTTGAAGCTCATGTCAGGTAAGCT
TCGTTCCAGATGGGAAGGTCCTTACATTATAACTAACATTTTCCCATATGGTGTAGTTGAGATAAGGAACCCCAAATCAGTTGATGGTCTCCCCAAGACGAACTCTGAAA
TTTCAAGTGGGAATCAAGTCACTCAAGCAATTAATCCTGGAAACAAGATCTCAACAATAAAGCTAACTGAGGAAAATTTCCTACTCTGGAAATTTCAAGTTCTCACGGCG
CTCGAAGGACATGAATTGGAAGAGCATATCAGTGAAGATTGCCAATCTCCTCCAGAGAAAATCCAAGTAAGTGAAGGTACCTCCAGTGTGAGTAAACCTAACCCTAATTA
TAAGTTATGGAAGAGGCAGGATAAACTAGTATCTTCTTGGATTGTTGGTTCAATGACTGAGTCTATTCTTGAATAA

mRNA sequence

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Protein sequence

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MEVYENSRLYKSKTKLFQDNQKVLLYNSKLKLMSGKLRSRWEGPYIITNIFPYGVVEIRNPKSVDGLPKTNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFQVLTA
LEGHELEEHISEDCQSPPEKIQVSEGTSSVSKPNPNYKLWKRQDKLVSSWIVGSMTESILE

Lag0032152 (gene) of Sponge gourd (AG-4) v1 genome