CuGenDBv2

Gene ID	Lag0032176
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr11:26575939..26577826
RNA-Seq Expression	Lag0032176
Synteny	Lag0032176
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

1.6e-63

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

TYK04936.1 F15O4.13 [Cucumis melo var. makuwa]

1.6e-63

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]

1.6e-63

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.6e-63

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

1.6e-63

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BWE8 F15O4.13

7.8e-64

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

A0A5D3C3D3 F15O4.13

7.8e-64

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

A0A5D3CK70 F15O4.13

7.8e-64

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein

7.8e-64

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

A0A5D3DRJ1 F15O4.13

7.8e-64

76.61

Show/hide

Query:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF
        G+ VP+V D N+AILQAIQGM+E+MREER ERRAQQQRE +  QEDE + DL    RQ+GGRGN+RGRGRNN    MQPRR ER+HEDRD GVKLKIPPF
Subjt:  GDGVPQVQDTNMAILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNF---MQPRRGERIHEDRDSGVKLKIPPF

Query:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM
        +GTAD E YL+WERKIEHVFDCNTFSENKKM+LAIAEFTN+A  WY +LKSERRRKEEDPI TWEELKEAM
Subjt:  SGTADVEAYLEWERKIEHVFDCNTFSENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGAGACAAAGGATTTCTCCTAAAGGAAAATACCTTTTGGCACCTAAGTGATATGGATTCAATCAATAATCCATTACATGTACCTGAAGGACCAATCACAAGGAGCAA
GGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATTCACAACGAGAGCCCGAGAATTTTGAATCCAAATTTTTGTATAATGTTAGTTCAGCAA
GTCAAAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGGTTGGAAGATGGCACGGAGGACAAAAAAAGGCGATGGAGTACCACAAGTACAAGATACTAATATG
GCTATTCTTCAAGCCATTCAAGGCATGATGGAAATGATGAGGGAAGAAAGGTTAGAAAGGAGGGCGCAACAACAAAGAGAAGAACAAGTCTTACAAGAAGATGAAGAAGT
GATTGATTTAGTTGAACAAGGAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATAATTTTATGCAACCTAGAAGAGGAGAAAGAATCCATGAAGATA
GGGATAGCGGAGTCAAGCTCAAAATTCCACCATTTAGTGGAACGGCGGATGTGGAGGCATACTTGGAATGGGAAAGGAAGATAGAACATGTGTTTGATTGCAACACATTT
AGTGAAAATAAGAAGATGCGACTTGCCATTGCCGAATTCACTAACCATGCTGGAAATTGGTATCAACATCTCAAATCCGAGAGGAGGAGGAAAGAGGAGGATCCCATTTT
AACTTGGGAAGAACTTAAAGAAGCCATGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MRDKGFLLKENTFWHLSDMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFESKFLYNVSSASQKRMESRWHGKSCVGWKMARRTKKGDGVPQVQDTNM
AILQAIQGMMEMMREERLERRAQQQREEQVLQEDEEVIDLVEQGRQVGGRGNMRGRGRNNFMQPRRGERIHEDRDSGVKLKIPPFSGTADVEAYLEWERKIEHVFDCNTF
SENKKMRLAIAEFTNHAGNWYQHLKSERRRKEEDPILTWEELKEAM

Lag0032176 (gene) of Sponge gourd (AG-4) v1 genome