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Lag0032192 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032192
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Genome locationchr11:27024394..27024966
RNA-Seq ExpressionLag0032192
SyntenyLag0032192
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU17915.1 hypothetical protein TSUD_330400, partial [Trifolium subterraneum]1.7e-2239.75Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH
        L++ K+ DY +L+PFGC+ YPCL+ Y  HK QFHT KCV+LG S+ HKG+KC+NS GRVFISRHV FNED FP+  GF ++       T SPS       
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH

Query:  LPVVHTPSSESAPLPQPSQSLTPPINLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTH
            H P   + P    ++S    IN    S     +    +     +   I   +  +TH
Subjt:  LPVVHTPSSESAPLPQPSQSLTPPINLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTH
MCI01597.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium]6.4e-2257.69Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
        L+++K+ DY  L+PFGC+ YPCL+ Y  HK Q+HT +CV+LG S+ HKG+KC+NS GR+F+SRHV FNE+ FP+  GF
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
PNX77541.1 retrofit protein [Trifolium pratense]1.3e-2254.35Show/hide
Query:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPS
        M+ K+ DY  L+PFGC+ YPCL+ Y  HK QFHT +CV+LG S+ HKG+KC+NS GR FISRHV FNED FP+  GF ++ +      ++PS
Subjt:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPS
PNY02796.1 copia protein (gag-int-pol protein), partial [Trifolium pratense]1.7e-2247.41Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH
        L+Y K+ DY  L+PFGC+ YPCL+ Y  HK QFHT +CV+LG S+ HKG+KCINS GR+F+SRHV FNE+ FP+  GF  +   + + T +P+  + F  
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH

Query:  LPV-----VHTPSSES
         P      +  P +ES
Subjt:  LPV-----VHTPSSES
RHN55409.1 putative RNA-directed DNA polymerase [Medicago truncatula]4.9e-2261.54Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
        LM++K  DYG L+PFGC+ YPCL+ Y  +K QFHT KCV++G S+ HKG+KCINS GR+F+SRHV FNE+ FP+  GF
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
TrEMBL top hitse value%identityAlignment
A0A151S6M8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-2252.13Show/hide
Query:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIM
        ++DK  DY A++ FGC+ YPCL+ Y  HK QFHT KCV+LG S  HKG+KC+NS GR+FISRHV FNE  FP+  GF ++     + T   S++
Subjt:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIM
A0A2K3LG81 Retrofit protein6.2e-2354.35Show/hide
Query:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPS
        M+ K+ DY  L+PFGC+ YPCL+ Y  HK QFHT +CV+LG S+ HKG+KC+NS GR FISRHV FNED FP+  GF ++ +      ++PS
Subjt:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPS
A0A2K3NIC3 Copia protein (Gag-int-pol protein) (Fragment)8.1e-2347.41Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH
        L+Y K+ DY  L+PFGC+ YPCL+ Y  HK QFHT +CV+LG S+ HKG+KCINS GR+F+SRHV FNE+ FP+  GF  +   + + T +P+  + F  
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAH

Query:  LPV-----VHTPSSES
         P      +  P +ES
Subjt:  LPV-----VHTPSSES
A0A392NP04 Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment)3.1e-2257.69Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
        L+++K+ DY  L+PFGC+ YPCL+ Y  HK Q+HT +CV+LG S+ HKG+KC+NS GR+F+SRHV FNE+ FP+  GF
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
A0A396HQ00 Putative RNA-directed DNA polymerase2.4e-2261.54Show/hide
Query:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
        LM++K  DYG L+PFGC+ YPCL+ Y  +K QFHT KCV++G S+ HKG+KCINS GR+F+SRHV FNE+ FP+  GF
Subjt:  LMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGF
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.6e-1028.71Show/hide
Query:  DYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCIN-SKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSP-------SIMLWFA
        +Y  LR FGC+ YP LR Y  HK    + +CV+LG S     + C++    R++ISRHVRF+E+ FP+     S+Y    +AT SP       S  +W  
Subjt:  DYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCIN-SKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSP-------SIMLWFA

Query:  HLPV-VHTPSSESAPLPQPSQSLTPP----------------------INLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTHSNTPAQTSSPDMSNR
        H  +   TP   +     P  + TPP                       + PS+  P+    + P   T   +T    HS Q+T  N P   S   ++  
Subjt:  HLPV-VHTPSSESAPLPQPSQSLTPP----------------------INLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTHSNTPAQTSSPDMSNR

Query:  IISQKLISS
        + +    SS
Subjt:  IISQKLISS
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.4e-1029.12Show/hide
Query:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCIN-SKGRVFISRHVRFNEDEFPYQ-AGFQSSYAAHNVATSSPSIMLWFA
        ++ +  +Y  L+ FGC+ YP LR Y  HK +  +++C ++G S     + C++   GR++ SRHV+F+E  FP+    F  S +    + S+P+   W +
Subjt:  MYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCIN-SKGRVFISRHVRFNEDEFPYQ-AGFQSSYAAHNVATSSPSIMLWFA

Query:  HLPVVHTPSSESAP---------LPQPSQSLTP-------PINLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTHSNTP
        H  +  TP    AP          P+P  S +P         NLPS+S  S ++S       +  +    PH  Q+++SN+P
Subjt:  HLPVVHTPSSESAP---------LPQPSQSLTP-------PINLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTHSNTP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGATGTATGACAAGCAACTTGACTATGGAGCCTTACGCCCGTTTGGCTGCTCGTACTATCCTTGTTTACGCTCCTATCAGTCACACAAATTTCAGTTTCATAC
TGAAAAATGTGTCTACCTTGGTCCTAGTCATGTTCACAAGGGCCACAAGTGTATCAACTCAAAAGGAAGAGTGTTCATTTCACGCCATGTTCGGTTTAATGAGGATGAGT
TTCCATATCAGGCTGGATTTCAATCTTCTTATGCTGCTCACAATGTTGCAACCAGCTCTCCTTCAATTATGTTGTGGTTTGCTCATTTACCTGTTGTCCATACGCCTTCA
TCAGAATCTGCTCCTTTACCGCAACCTTCACAGAGCCTTACTCCTCCTATTAACTTACCTTCGACATCTACACCAAGCCACACAAATTCCTCTCTGCCTTTGACAGTTAC
CTCTTTGCAAAGGACTGATATTTCACCTCACTCTCAACAATCTACACATTCCAATACCCCTGCCCAAACCTCATCTCCAGATATGTCCAACCGAATTATCTCTCAAAAGC
TTATATCCTCTCAAGTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTGATGTATGACAAGCAACTTGACTATGGAGCCTTACGCCCGTTTGGCTGCTCGTACTATCCTTGTTTACGCTCCTATCAGTCACACAAATTTCAGTTTCATAC
TGAAAAATGTGTCTACCTTGGTCCTAGTCATGTTCACAAGGGCCACAAGTGTATCAACTCAAAAGGAAGAGTGTTCATTTCACGCCATGTTCGGTTTAATGAGGATGAGT
TTCCATATCAGGCTGGATTTCAATCTTCTTATGCTGCTCACAATGTTGCAACCAGCTCTCCTTCAATTATGTTGTGGTTTGCTCATTTACCTGTTGTCCATACGCCTTCA
TCAGAATCTGCTCCTTTACCGCAACCTTCACAGAGCCTTACTCCTCCTATTAACTTACCTTCGACATCTACACCAAGCCACACAAATTCCTCTCTGCCTTTGACAGTTAC
CTCTTTGCAAAGGACTGATATTTCACCTCACTCTCAACAATCTACACATTCCAATACCCCTGCCCAAACCTCATCTCCAGATATGTCCAACCGAATTATCTCTCAAAAGC
TTATATCCTCTCAAGTGACTTAA
Protein sequenceShow/hide protein sequence
MELMYDKQLDYGALRPFGCSYYPCLRSYQSHKFQFHTEKCVYLGPSHVHKGHKCINSKGRVFISRHVRFNEDEFPYQAGFQSSYAAHNVATSSPSIMLWFAHLPVVHTPS
SESAPLPQPSQSLTPPINLPSTSTPSHTNSSLPLTVTSLQRTDISPHSQQSTHSNTPAQTSSPDMSNRIISQKLISSQVT