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Lag0032223 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032223
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:27670425..27670781
RNA-Seq ExpressionLag0032223
SyntenyLag0032223
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX95452.1 ribonuclease H, partial [Trifolium pratense]5.5e-3257.26Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        MP+Q+GR+K   F  I+D++   LKGWKEK  S  G+  LIK+VAQAIPTYIM+CF LP  +C  I+R+  K WW +S +K K HW+ WS +CKNK  GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR I AFN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
XP_030923509.1 uncharacterized protein LOC115950456 [Quercus lobata]1.2e-3152.99Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS IG++K   F++IK++VEK L GWKEK  S+GG+E+LIK+VAQAIPTY M+CF++P  +C +++ +  K WW   G++ +  W+SW +MCK+K +GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        +GFR + AFN AMLAKQ
Subjt:  LGFRKISAFNHAMLAKQ
XP_030970416.1 uncharacterized protein LOC115990765 [Quercus lobata]1.2e-3152.99Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS IG++K   F++IK++VEK L GWKEK  S+GG+E+LIK+VAQAIPTY M+CF++P  +C +++ +  K WW   G++ +  W+SW +MCK+K +GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        +GFR + AFN AMLAKQ
Subjt:  LGFRKISAFNHAMLAKQ
XP_030970552.1 uncharacterized protein LOC115990926 [Quercus lobata]1.2e-3152.99Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS IG++K   F++IK++VEK L GWKEK  S+GG+E+LIK+VAQAIPTY M+CF++P  +C +++ +  K WW   G++ +  W+SW +MCK+K +GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        +GFR + AFN AMLAKQ
Subjt:  LGFRKISAFNHAMLAKQ
XP_042952327.1 uncharacterized protein LOC122289400 [Carya illinoinensis]1.9e-3256.41Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +P  +GR K  AFS IK KV K L+GWKEK  S+GGKE+LIK+VA +IPTY MNCF+LP+ +C ++++L AK WW    E+ K HWMSWSKMC  K+ GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        +GF+ +  FN A+LAK+
Subjt:  LGFRKISAFNHAMLAKQ
TrEMBL top hitse value%identityAlignment
A0A2K3MXE7 Ribonuclease H (Fragment)2.7e-3257.26Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        MP+Q+GR+K   F  I+D++   LKGWKEK  S  G+  LIK+VAQAIPTYIM+CF LP  +C  I+R+  K WW +S +K K HW+ WS +CKNK  GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR I AFN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
A0A2N9F6L9 Reverse transcriptase domain-containing protein2.0e-3253.85Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS +GRN+  +FS+IK++V + LKGWKEK  S  G+E+LIK+VAQAIPTY M+CFRLP  +C D++ +  + WW ++ E+ K HW+SW K+C++K+ GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR +  FN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
A0A2N9GWE9 Uncharacterized protein2.4e-3355.56Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS +GR+K A+FS++K++V + + GWKEKF S+GG+EVLIK+VAQAIP+Y M+CFRLP+ +C +++ + +  WW    +K+K HW+SWSKMCK K  GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR +  FN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
A0A2N9H7G2 Reverse transcriptase domain-containing protein1.6e-3258.97Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS +GR K  AF+ +K KVEK +KGWKE F S GG+EVLIK+VAQAIPTY MNCF+LPN +C DI  L  + WW     + K HW+SW K+C +K  GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR + AFN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
A0A2N9IT09 Uncharacterized protein2.7e-3253.85Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        +PS +GR+K A+FS+++++V + + GWKEKF S+GG+EVLIK+VAQAIP+Y M+CFRLP+ +C +++ + +  WW    +K+K HW+SW+KMCK K  GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAKQ
        LGFR +  FN A+LAKQ
Subjt:  LGFRKISAFNHAMLAKQ
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657507.5e-1636.21Show/hide
Query:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG
        MP    R     F +I ++V   + GW+EK  S  G+  L K+V  ++P + M+   LP  I   +D+L     W S+ EK KQH + WSK+C  K+ GG
Subjt:  MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGG

Query:  LGFRKISAFNHAMLAK
        LG R   + N A+++K
Subjt:  LGFRKISAFNHAMLAK
P93295 Uncharacterized mitochondrial protein AtMg003105.4e-1447.95Show/hide
Query:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKE-LGGLGFRKISAFNHAMLAKQS
        A+P Y M+CFRL   +C  +     + WW S   K K  W++W K+CK+KE  GGLGFR +  FN A+LAKQS
Subjt:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKE-LGGLGFRKISAFNHAMLAKQS
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-1343.66Show/hide
Query:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGGLGFRKISAFNHAMLAKQ
        A+PTY M CF LP  +C  I  + A  WW +  E    HW +W  +   K  GG+GF+ I AFN A+L KQ
Subjt:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGGLGFRKISAFNHAMLAKQ
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.8e-1547.95Show/hide
Query:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKE-LGGLGFRKISAFNHAMLAKQS
        A+P Y M+CFRL   +C  +     + WW S   K K  W++W K+CK+KE  GGLGFR +  FN A+LAKQS
Subjt:  AIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKE-LGGLGFRKISAFNHAMLAKQS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTCAAATTGGGAGGAACAAAGGAGCTGCTTTCTCGAAAATCAAAGACAAAGTGGAAAAAATCCTCAAAGGATGGAAAGAAAAGTTTTTCTCTCTAGGGGGAAA
AGAAGTGTTAATCAAATCGGTGGCACAAGCTATCCCCACATATATCATGAATTGTTTTCGGCTTCCTAACTATATTTGTTGTGATATTGACAGGTTGTGTGCCAAATTAT
GGTGGGAATCATCGGGAGAGAAAGATAAGCAGCATTGGATGAGTTGGAGCAAGATGTGCAAGAACAAAGAGCTAGGAGGCCTGGGTTTCAGAAAGATATCAGCATTCAAC
CACGCTATGCTCGCAAAACAAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTCAAATTGGGAGGAACAAAGGAGCTGCTTTCTCGAAAATCAAAGACAAAGTGGAAAAAATCCTCAAAGGATGGAAAGAAAAGTTTTTCTCTCTAGGGGGAAA
AGAAGTGTTAATCAAATCGGTGGCACAAGCTATCCCCACATATATCATGAATTGTTTTCGGCTTCCTAACTATATTTGTTGTGATATTGACAGGTTGTGTGCCAAATTAT
GGTGGGAATCATCGGGAGAGAAAGATAAGCAGCATTGGATGAGTTGGAGCAAGATGTGCAAGAACAAAGAGCTAGGAGGCCTGGGTTTCAGAAAGATATCAGCATTCAAC
CACGCTATGCTCGCAAAACAAAGCTGA
Protein sequenceShow/hide protein sequence
MPSQIGRNKGAAFSKIKDKVEKILKGWKEKFFSLGGKEVLIKSVAQAIPTYIMNCFRLPNYICCDIDRLCAKLWWESSGEKDKQHWMSWSKMCKNKELGGLGFRKISAFN
HAMLAKQS