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Lag0032230 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032230
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:27733457..27733783
RNA-Seq ExpressionLag0032230
SyntenyLag0032230
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0032259 - methylation (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038266.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-1849.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    FHC EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  + SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

KAA0043037.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-1849.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    FHC EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  + SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

KAA0055700.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-1749.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    F C EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  L SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

TYK00786.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-1749.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    F C EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  L SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]1.6e-1744.44Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVNDFKEIELVQGESFVEEEEEC----PEIVNLVEFDLKSVIDFFTPSTMKVKGLLDEREIVILID
        F+  ++    F C+EKY   HRCK +E RELR+++V + +E E+V+   + E E  C    PE   +VE  + SV+    P TMKV+G + +RE++ILID
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVNDFKEIELVQGESFVEEEEEC----PEIVNLVEFDLKSVIDFFTPSTMKVKGLLDEREIVILID

Query:  CGATHNFI
        CGATHNFI
Subjt:  CGATHNFI

TrEMBL top hitse value%identityAlignment
A0A5A7T7R9 Ty3/gypsy retrotransposon protein3.4e-1849.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    FHC EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  + SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

A0A5A7TML6 Ty3/gypsy retrotransposon protein3.4e-1849.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    FHC EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  + SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

A0A5A7UX59 Ty3/gypsy retrotransposon protein2.9e-1749.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    F C EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  L SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

A0A5A7VBU7 Ty3/gypsy retrotransposon protein2.9e-1749.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    F C EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  L SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

A0A5D3BRA0 Ty3/gypsy retrotransposon protein2.9e-1749.09Show/hide
Query:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL
        F+   +    F C EKY   HRCKSKE +ELR+ +V +  +E+E+V+ E F  E E    E P + NL +E  L SV+    P TMKVKG + E E+VIL
Subjt:  FRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVND-FKEIELVQGESFVEEEE----ECPEIVNL-VEFDLKSVIDFFTPSTMKVKGLLDEREIVIL

Query:  IDCGATHNFI
        IDCGATHNFI
Subjt:  IDCGATHNFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAATTTCAGGCCAAACGAGAAAACGGCCTGTGTGTTTCATTGTGATGAAAAATACAACCCAAATCATCGCTGCAAAAGTAAAGAAGTGAGGGAACTTAGGGTTTT
TATTGTGAATGATTTCAAGGAAATTGAGTTAGTACAAGGAGAGAGCTTTGTGGAAGAAGAAGAAGAGTGCCCTGAAATTGTTAATTTAGTCGAGTTTGACCTCAAATCAG
TGATCGATTTCTTCACTCCTAGCACAATGAAAGTGAAGGGACTGCTCGACGAAAGAGAGATAGTCATTCTGATCGATTGTGGGGCGACTCACAACTTCATATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAATTTCAGGCCAAACGAGAAAACGGCCTGTGTGTTTCATTGTGATGAAAAATACAACCCAAATCATCGCTGCAAAAGTAAAGAAGTGAGGGAACTTAGGGTTTT
TATTGTGAATGATTTCAAGGAAATTGAGTTAGTACAAGGAGAGAGCTTTGTGGAAGAAGAAGAAGAGTGCCCTGAAATTGTTAATTTAGTCGAGTTTGACCTCAAATCAG
TGATCGATTTCTTCACTCCTAGCACAATGAAAGTGAAGGGACTGCTCGACGAAAGAGAGATAGTCATTCTGATCGATTGTGGGGCGACTCACAACTTCATATTGTAG
Protein sequenceShow/hide protein sequence
MQNFRPNEKTACVFHCDEKYNPNHRCKSKEVRELRVFIVNDFKEIELVQGESFVEEEEECPEIVNLVEFDLKSVIDFFTPSTMKVKGLLDEREIVILIDCGATHNFIL