; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032231 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032231
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr11:27733811..27735572
RNA-Seq ExpressionLag0032231
SyntenyLag0032231
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033702.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-3438.96Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +    ED +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

KAA0036997.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]8.7e-3438.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +     D +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

KAA0052160.1 peroxidase 64 [Cucumis melo var. makuwa]1.3e-3438.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--
        M   +NYGV+MG++ + +G G+CKG+ + LP +TI EDFLPLEL  L+++L            V  + L +    ED +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ D+F +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L++ 
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TS FSSLV+LVKKK G W+FC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

KAA0057859.1 pleiotropic drug resistance protein 1-like [Cucumis melo var. makuwa]5.4e-3643.68Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL----VQLRELKLEDERESNL----GDK--------NESEAEIPREMLSL
        M  T+NYGV+MG+  + +G G+CKG+ + LP +T+ EDFLPL+L  ++++L    +Q +     D +   +    GD          +S  +   E   L
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL----VQLRELKLEDERESNL----GDK--------NESEAEIPREMLSL

Query:  LREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
         +E++D+F +P+ LPP R ++H+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  LREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.7e-3438.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +     D +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

TrEMBL top hitse value%identityAlignment
A0A5A7SR72 Ty3/gypsy retrotransposon protein1.9e-3438.96Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +    ED +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

A0A5A7UAD9 Peroxidase 646.5e-3538.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--
        M   +NYGV+MG++ + +G G+CKG+ + LP +TI EDFLPLEL  L+++L            V  + L +    ED +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKL----EDERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ D+F +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L++ 
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TS FSSLV+LVKKK G W+FC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

A0A5A7UWA7 Pleiotropic drug resistance protein 1-like2.6e-3643.68Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL----VQLRELKLEDERESNL----GDK--------NESEAEIPREMLSL
        M  T+NYGV+MG+  + +G G+CKG+ + LP +T+ EDFLPL+L  ++++L    +Q +     D +   +    GD          +S  +   E   L
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL----VQLRELKLEDERESNL----GDK--------NESEAEIPREMLSL

Query:  LREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
         +E++D+F +P+ LPP R ++H+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  LREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

A0A5D3BD16 Ty3/gypsy retrotransposon protein4.2e-3438.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +     D +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

A0A5D3CEX8 Ty3/gypsy retrotransposon protein4.2e-3438.53Show/hide
Query:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--
        M  T+NYGV+MG+  + +G G+CKG+ + LP ++I EDFLPLEL  ++++L            V  + L +     D +    GD + +  EI  ++L  
Subjt:  MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVIL------------VQLRELKLE----DERESNLGDKNESEAEIPREML--

Query:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR
                                                L +E+ DVF +P+GLPP R +DH+I +KEG  P+NVRP++Y HAQK +IE+L+ + L+  
Subjt:  ---------------------------------------SLLREYEDVFNLPEGLPPKRVVDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIR

Query:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA
        IIRP+TSPFSS V+LVKKK G WRFC+DYRA
Subjt:  IIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA

SwissProt top hitse value%identityAlignment
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-0633.33Show/hide
Query:  LLREYEDVFNLPEGLPPKRV------VDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYR
        L ++Y ++  +   LPP+        V H I +K G     ++P+      + +I K++ + L  + I P+ SP SS VVLV KK G +R C+DYR
Subjt:  LLREYEDVFNLPEGLPPKRV------VDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYR

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-0633.33Show/hide
Query:  LLREYEDVFNLPEGLPPKRV------VDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYR
        L ++Y ++  +   LPP+        V H I +K G     ++P+      + +I K++ + L  + I P+ SP SS VVLV KK G +R C+DYR
Subjt:  LLREYEDVFNLPEGLPPKRV------VDHQIIMKEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTAACATCCAACTATGGAGTAGTAATGGGGAACAAATCGTCGACTAGAGGAAACGGGGTTTGCAAAGGGGTGGTCATCACACTGCCAAAGGTCACTATTACTGA
AGATTTCTTACCCCTAGAGTTAGAAGTGCTCAATGTAATTTTGGTACAACTGCGTGAATTGAAATTGGAAGACGAAAGAGAGTCTAATTTGGGTGATAAGAATGAAAGTG
AGGCCGAAATACCAAGGGAAATGCTCTCCCTCCTTAGGGAATATGAAGATGTCTTCAACTTACCTGAGGGACTTCCCCCGAAGAGGGTGGTCGATCACCAGATCATCATG
AAAGAGGGTCAAGGGCCTGTGAATGTGCGACCCTTCAAATATGCTCACGCACAGAAAGCGAAAATAGAAAAGTTGATAACAGAAAGGCTTTCCATAAGAATTATACGACC
CAACACTAGTCCATTCTCAAGCCTCGTGGTACTAGTCAAGAAGAAATATGGGGATTGGAGATTTTGCATGGATTATCGTGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTAACATCCAACTATGGAGTAGTAATGGGGAACAAATCGTCGACTAGAGGAAACGGGGTTTGCAAAGGGGTGGTCATCACACTGCCAAAGGTCACTATTACTGA
AGATTTCTTACCCCTAGAGTTAGAAGTGCTCAATGTAATTTTGGTACAACTGCGTGAATTGAAATTGGAAGACGAAAGAGAGTCTAATTTGGGTGATAAGAATGAAAGTG
AGGCCGAAATACCAAGGGAAATGCTCTCCCTCCTTAGGGAATATGAAGATGTCTTCAACTTACCTGAGGGACTTCCCCCGAAGAGGGTGGTCGATCACCAGATCATCATG
AAAGAGGGTCAAGGGCCTGTGAATGTGCGACCCTTCAAATATGCTCACGCACAGAAAGCGAAAATAGAAAAGTTGATAACAGAAAGGCTTTCCATAAGAATTATACGACC
CAACACTAGTCCATTCTCAAGCCTCGTGGTACTAGTCAAGAAGAAATATGGGGATTGGAGATTTTGCATGGATTATCGTGCATAA
Protein sequenceShow/hide protein sequence
MILTSNYGVVMGNKSSTRGNGVCKGVVITLPKVTITEDFLPLELEVLNVILVQLRELKLEDERESNLGDKNESEAEIPREMLSLLREYEDVFNLPEGLPPKRVVDHQIIM
KEGQGPVNVRPFKYAHAQKAKIEKLITERLSIRIIRPNTSPFSSLVVLVKKKYGDWRFCMDYRA