; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032234 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032234
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr11:27786658..27787974
RNA-Seq ExpressionLag0032234
SyntenyLag0032234
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO61345.1 reverse transcriptase [Corchorus capsularis]1.0e-0940.95Show/hide
Query:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK
        E + + WE FNLT E+  EV VD +    T       L+GKLL+ R ++ EVMR        +  GL V ++G NLF+F   S  E+ RV +Q PW F+K
Subjt:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK

Query:  FLVVL
         L+VL
Subjt:  FLVVL

OMP10859.1 hypothetical protein COLO4_04212 [Corchorus olitorius]1.9e-0837.14Show/hide
Query:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK
        E + + W+KF+LT E+ ++V VD +  A T       L+GKLL+ R ++ EVMR        +  GL ++ +G  LF+F    + E+ RV +Q PW F+K
Subjt:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK

Query:  FLVVL
         L+VL
Subjt:  FLVVL

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.1e-1138.14Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPI-GLMVEKLGSNLFLFSLWSKEERTRVLRQEP
        MA   ++E W+ F LT+ ED   VD+D  A   T K L  SL+ KLL+ R IS  V++   K A  +      V+ +G N+FLF+     +R R+LR  P
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPI-GLMVEKLGSNLFLFSLWSKEERTRVLRQEP

Query:  WLFDKFLVVLSIPIPLVK
        W FD+ L+++  P+ L K
Subjt:  WLFDKFLVVLSIPIPLVK

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]5.2e-1440.83Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPW
        M  E ++ +W+KF LT+ ED   +DVD  A  +  + L +SLVGKLLA RIIS +V+ +    A  +   L VE +G NLFLF    + +  RV++  PW
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPW

Query:  LFDKFLVVLSIPIPLVKLDE
         FDK L+VL  P     + E
Subjt:  LFDKFLVVLSIPIPLVKLDE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.9e-1037.19Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLM-VEKLGSNLFLFSLWSKEERTRVLRQEP
        MA  +++E W+ F LT+ E+ T +DVD  A A T   L   LVGKL   R I+  VM+   + A  +      V+ LG NLFLFS     +R ++ +  P
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLM-VEKLGSNLFLFSLWSKEERTRVLRQEP

Query:  WLFDKFLVVLSIPIPLVKLDE
        W FD+ LV+++ P+ L+   E
Subjt:  WLFDKFLVVLSIPIPLVKLDE

TrEMBL top hitse value%identityAlignment
A0A1R3GTB5 Reverse transcriptase4.9e-1040.95Show/hide
Query:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK
        E + + WE FNLT E+  EV VD +    T       L+GKLL+ R ++ EVMR        +  GL V ++G NLF+F   S  E+ RV +Q PW F+K
Subjt:  EEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDK

Query:  FLVVL
         L+VL
Subjt:  FLVVL

A0A2N9F0P5 Uncharacterized protein5.4e-0933.33Show/hide
Query:  MAFEEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWL
        M  E ++++W KF+LT  +     V   A   T K    SL+GKL+  +  S + M+       G   G+ V+ +  NLF+F    + ERTRV+   PW+
Subjt:  MAFEEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWL

Query:  FDKFLVVL
        FD +L+ L
Subjt:  FDKFLVVL

A0A6J1BSZ1 uncharacterized protein LOC1110054812.0e-1138.14Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPI-GLMVEKLGSNLFLFSLWSKEERTRVLRQEP
        MA   ++E W+ F LT+ ED   VD+D  A   T K L  SL+ KLL+ R IS  V++   K A  +      V+ +G N+FLF+     +R R+LR  P
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPI-GLMVEKLGSNLFLFSLWSKEERTRVLRQEP

Query:  WLFDKFLVVLSIPIPLVK
        W FD+ L+++  P+ L K
Subjt:  WLFDKFLVVLSIPIPLVK

A0A6J1DU55 uncharacterized protein LOC1110231352.5e-1440.83Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPW
        M  E ++ +W+KF LT+ ED   +DVD  A  +  + L +SLVGKLLA RIIS +V+ +    A  +   L VE +G NLFLF    + +  RV++  PW
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPW

Query:  LFDKFLVVLSIPIPLVKLDE
         FDK L+VL  P     + E
Subjt:  LFDKFLVVLSIPIPLVKLDE

A0A6J1DX30 uncharacterized protein LOC1110248742.9e-1037.19Show/hide
Query:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLM-VEKLGSNLFLFSLWSKEERTRVLRQEP
        MA  +++E W+ F LT+ E+ T +DVD  A A T   L   LVGKL   R I+  VM+   + A  +      V+ LG NLFLFS     +R ++ +  P
Subjt:  MAFEEMMENWEKFNLTT-EDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLM-VEKLGSNLFLFSLWSKEERTRVLRQEP

Query:  WLFDKFLVVLSIPIPLVKLDE
        W FD+ LV+++ P+ L+   E
Subjt:  WLFDKFLVVLSIPIPLVKLDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTCGAAGAGATGATGGAAAATTGGGAGAAATTTAATTTGACGACCGAAGATGGGACCGAGGTTGATGTTGATCGTCAAGCAGCGGCCATCACTAGCAAGTCCTT
GGGTTTCAGTCTGGTTGGTAAACTTCTCGCGCCCCGAATAATCTCGGGAGAGGTGATGCGGAAATACTTCAAGGCAGCATTGGGCATTCCGATTGGGCTCATGGTGGAGA
AACTTGGGTCTAATCTGTTCCTGTTTTCCTTGTGGTCTAAAGAGGAGCGAACTCGTGTACTTCGGCAAGAACCATGGTTGTTCGACAAATTTTTGGTGGTTCTCTCCATA
CCAATTCCTTTGGTGAAGCTCGATGAACCAATGGGCAGCTATTACTATTTGGAAGATGGGTCTAATTCTCAGAATCATCAATATGACATGTGGATGCAGTTTGCGGGCCA
TTCGTCGAGTCTGTTTCGATCAAGGAGCTCGATCGAATATGGCGATTGGCATGGGCGGCATTGGAGTGGGATCCCCGTTGCAAGACTACGACAGCAAACCGATAGAGATC
TCGCCGATGATGGGGGACTCGGTTACAAACACGTTCACGATGCCAACTTGCGAATTAATAGTGTTAATGAAGGTCATAATGGTGCTGAGTCATCCAAGGCCAAAAAGAAG
CTTGATTATGCGACATTTAATGAAGAGTTTCTGTGGAAGACAGATTTAAATGGGAAATTTAATGACAACTCGATGGGTTTGGGGCAATCGGTGGATTTTTTTCCTTCTCA
GTCAAGTGCAGCCGACAACTCTTTTAAAAGCCAAGAGTTAATGAATGGTGGGCCAGTTTTTTATTCCTTAACTGATCGAAACCAAAAATTTGAGGGAAAGGAAAAGCGAT
CTGATGCTTACAAATTTGATCTCAACCCAAACTTTAATGACGCCTACCCAAATGAACCATGCATTACACAGAAACCGAATGTTCCAGCAGTCCACGTGGAATCGGCCCAT
ACTGAAAATCAGTCGACGGTACATGTGGGGGGGCTGAACGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATTCGAAGAGATGATGGAAAATTGGGAGAAATTTAATTTGACGACCGAAGATGGGACCGAGGTTGATGTTGATCGTCAAGCAGCGGCCATCACTAGCAAGTCCTT
GGGTTTCAGTCTGGTTGGTAAACTTCTCGCGCCCCGAATAATCTCGGGAGAGGTGATGCGGAAATACTTCAAGGCAGCATTGGGCATTCCGATTGGGCTCATGGTGGAGA
AACTTGGGTCTAATCTGTTCCTGTTTTCCTTGTGGTCTAAAGAGGAGCGAACTCGTGTACTTCGGCAAGAACCATGGTTGTTCGACAAATTTTTGGTGGTTCTCTCCATA
CCAATTCCTTTGGTGAAGCTCGATGAACCAATGGGCAGCTATTACTATTTGGAAGATGGGTCTAATTCTCAGAATCATCAATATGACATGTGGATGCAGTTTGCGGGCCA
TTCGTCGAGTCTGTTTCGATCAAGGAGCTCGATCGAATATGGCGATTGGCATGGGCGGCATTGGAGTGGGATCCCCGTTGCAAGACTACGACAGCAAACCGATAGAGATC
TCGCCGATGATGGGGGACTCGGTTACAAACACGTTCACGATGCCAACTTGCGAATTAATAGTGTTAATGAAGGTCATAATGGTGCTGAGTCATCCAAGGCCAAAAAGAAG
CTTGATTATGCGACATTTAATGAAGAGTTTCTGTGGAAGACAGATTTAAATGGGAAATTTAATGACAACTCGATGGGTTTGGGGCAATCGGTGGATTTTTTTCCTTCTCA
GTCAAGTGCAGCCGACAACTCTTTTAAAAGCCAAGAGTTAATGAATGGTGGGCCAGTTTTTTATTCCTTAACTGATCGAAACCAAAAATTTGAGGGAAAGGAAAAGCGAT
CTGATGCTTACAAATTTGATCTCAACCCAAACTTTAATGACGCCTACCCAAATGAACCATGCATTACACAGAAACCGAATGTTCCAGCAGTCCACGTGGAATCGGCCCAT
ACTGAAAATCAGTCGACGGTACATGTGGGGGGGCTGAACGTTTAG
Protein sequenceShow/hide protein sequence
MAFEEMMENWEKFNLTTEDGTEVDVDRQAAAITSKSLGFSLVGKLLAPRIISGEVMRKYFKAALGIPIGLMVEKLGSNLFLFSLWSKEERTRVLRQEPWLFDKFLVVLSI
PIPLVKLDEPMGSYYYLEDGSNSQNHQYDMWMQFAGHSSSLFRSRSSIEYGDWHGRHWSGIPVARLRQQTDRDLADDGGLGYKHVHDANLRINSVNEGHNGAESSKAKKK
LDYATFNEEFLWKTDLNGKFNDNSMGLGQSVDFFPSQSSAADNSFKSQELMNGGPVFYSLTDRNQKFEGKEKRSDAYKFDLNPNFNDAYPNEPCITQKPNVPAVHVESAH
TENQSTVHVGGLNV