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Lag0032252 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032252
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:28572671..28577228
RNA-Seq ExpressionLag0032252
SyntenyLag0032252
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO64624.1 reverse transcriptase [Corchorus capsularis]6.4e-0429.55Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEIIAKLVEITQ
        W++ +PSGS+ SW  ++ +FL+K+  +       ++I    Q+  E  +EF + F        SGG  +  TP  AW +I  +   TQ
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEIIAKLVEITQ

OMP03221.1 Retrotransposon gag protein [Corchorus olitorius]3.8e-0425.16Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHDELGSPTSKQQQE
        W +SLP  S+ SW ++   FL++Y  ++ + +  R+I++A Q PE    + +D   S G +    P EA E++ +L +        +DE+   TSK  + 
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHDELGSPTSKQQQE

Query:  DDHSEVRTRCLVINM-FGMVEDHMFKMSYIVHYACNLSLSVHEPLKTRPGILSSL
         D++E++     I   F +++  +  ++ +++   N    V +P + +P  L  L
Subjt:  DDHSEVRTRCLVINM-FGMVEDHMFKMSYIVHYACNLSLSVHEPLKTRPGILSSL

XP_027103201.1 uncharacterized protein LOC113724507 [Coffea arabica]7.6e-0527.86Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFT--------SGGDVLGTTPGEAWEIIAKLVEITQ---FRSTSH--
        W++ LP+GS+ +W++++  FL+K+   +      ++I N  Q P E  +++ +  T        SGG +   TP +AWE I  + E +Q   FR ++   
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFT--------SGGDVLGTTPGEAWEIIAKLVEITQ---FRSTSH--

Query:  --DELGSPTSKQQQEDDHSEVR------TRCLVINMFGMV
           E+ + + +QQ  +  S VR      T+   +NM G V
Subjt:  --DELGSPTSKQQQEDDHSEVR------TRCLVINMFGMV

XP_027150381.1 uncharacterized protein LOC113750623 [Coffea eugenioides]7.6e-0530.21Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF--------TSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHD
        W++  P GS+ +W +++  FL KY   + +    +KI    Q P E  +E+ + F         SGG ++   P EAWE+I  + E +Q   T  D
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF--------TSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHD

XP_042467215.1 uncharacterized protein LOC122050375 [Zingiber officinale]7.6e-0535Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEII
        W+F LPSG++  WS+MR +FL K+   +      + I    QA  E  HE+ + F        SGG ++  TP +A E+I
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEII

TrEMBL top hitse value%identityAlignment
A0A1R3H2R0 Reverse transcriptase3.1e-0429.55Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEIIAKLVEITQ
        W++ +PSGS+ SW  ++ +FL+K+  +       ++I    Q+  E  +EF + F        SGG  +  TP  AW +I  +   TQ
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF-------TSGGDVLGTTPGEAWEIIAKLVEITQ

A0A1R3K813 Retrotransposon gag protein1.8e-0425.16Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHDELGSPTSKQQQE
        W +SLP  S+ SW ++   FL++Y  ++ + +  R+I++A Q PE    + +D   S G +    P EA E++ +L +        +DE+   TSK  + 
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHDELGSPTSKQQQE

Query:  DDHSEVRTRCLVINM-FGMVEDHMFKMSYIVHYACNLSLSVHEPLKTRPGILSSL
         D++E++     I   F +++  +  ++ +++   N    V +P + +P  L  L
Subjt:  DDHSEVRTRCLVINM-FGMVEDHMFKMSYIVHYACNLSLSVHEPLKTRPGILSSL

A0A6P6S948 uncharacterized protein LOC1136890435.3e-0429.41Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF----TSGGDVLGTTPGEAWEIIAKLVEITQ
        W++ LP+GSV +W++++  FLKK+   +      ++I +  Q P E  +++ +       SGG +   TP EAW +I  + + +Q
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYF----TSGGDVLGTTPGEAWEIIAKLVEITQ

A0A6P6VKI6 uncharacterized protein LOC1137245073.7e-0527.86Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFT--------SGGDVLGTTPGEAWEIIAKLVEITQ---FRSTSH--
        W++ LP+GS+ +W++++  FL+K+   +      ++I N  Q P E  +++ +  T        SGG +   TP +AWE I  + E +Q   FR ++   
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFT--------SGGDVLGTTPGEAWEIIAKLVEITQ---FRSTSH--

Query:  --DELGSPTSKQQQEDDHSEVR------TRCLVINMFGMV
           E+ + + +QQ  +  S VR      T+   +NM G V
Subjt:  --DELGSPTSKQQQEDDHSEVR------TRCLVINMFGMV

A0A6P6XE77 uncharacterized protein LOC1137410196.9e-0428.81Show/hide
Query:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDY----FTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHD-------E
        W++ LP+G + +W EM+  F +KY   +      ++I +  Q   E  +E+ +       SGG ++  T  EAWE+I ++ E  Q   T  D       E
Subjt:  WIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDY----FTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHD-------E

Query:  LGSPTSKQQQEDDHSEVR
        + S + +QQ  +  S VR
Subjt:  LGSPTSKQQQEDDHSEVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATTTTCTCACTACCTTCGGGATCAGTAGCTTCTTGGAGTGAGATGAGAAATATTTTCTTGAAGAAGTACCATCTGATCGCTCTATTGATTGAAGCCACCAGAAA
AATTGTCAACGCCACGCAAGCACCTGAGGAGATGTTCCATGAGTTCATGGACTACTTCACTAGTGGTGGTGATGTGCTTGGTACAACACCCGGTGAGGCATGGGAGATTA
TTGCAAAGCTGGTAGAGATCACTCAATTTCGTTCTACCTCCCATGATGAGCTAGGGAGCCCAACTTCAAAGCAACAGCAAGAAGATGACCATTCTGAAGTTAGAACTAGA
TGCCTTGTGATTAACATGTTTGGGATGGTTGAGGATCATATGTTTAAAATGTCTTATATTGTTCACTATGCGTGCAATCTGAGTCTTTCTGTGCATGAGCCTCTAAAGAC
AAGACCTGGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCATAGACTTAGAGACATACCGGTGTAACCTTTGTGGTTATTGTGTCATTC
AAAGAAGGAATTTCCAGCGAAGAAAATCAAAGGCGGCTGCTGCGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAATGAAGTGCAAACACCACCAC
TATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCGAAGACTGGTGGGAGTCTAGAGGGAGAATTCTCTGAGAGTAGGAGAATGAATGAGATGTCTTTCACCCCACC
CCAGGGGTCCTGGCCAAAACCTTGTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGATTTTCTCACTACCTTCGGGATCAGTAGCTTCTTGGAGTGAGATGAGAAATATTTTCTTGAAGAAGTACCATCTGATCGCTCTATTGATTGAAGCCACCAGAAA
AATTGTCAACGCCACGCAAGCACCTGAGGAGATGTTCCATGAGTTCATGGACTACTTCACTAGTGGTGGTGATGTGCTTGGTACAACACCCGGTGAGGCATGGGAGATTA
TTGCAAAGCTGGTAGAGATCACTCAATTTCGTTCTACCTCCCATGATGAGCTAGGGAGCCCAACTTCAAAGCAACAGCAAGAAGATGACCATTCTGAAGTTAGAACTAGA
TGCCTTGTGATTAACATGTTTGGGATGGTTGAGGATCATATGTTTAAAATGTCTTATATTGTTCACTATGCGTGCAATCTGAGTCTTTCTGTGCATGAGCCTCTAAAGAC
AAGACCTGGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCATAGACTTAGAGACATACCGGTGTAACCTTTGTGGTTATTGTGTCATTC
AAAGAAGGAATTTCCAGCGAAGAAAATCAAAGGCGGCTGCTGCGTTTTCGTTCGTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAATGAAGTGCAAACACCACCAC
TATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCGAAGACTGGTGGGAGTCTAGAGGGAGAATTCTCTGAGAGTAGGAGAATGAATGAGATGTCTTTCACCCCACC
CCAGGGGTCCTGGCCAAAACCTTGTTCCTAA
Protein sequenceShow/hide protein sequence
MWIFSLPSGSVASWSEMRNIFLKKYHLIALLIEATRKIVNATQAPEEMFHEFMDYFTSGGDVLGTTPGEAWEIIAKLVEITQFRSTSHDELGSPTSKQQQEDDHSEVRTR
CLVINMFGMVEDHMFKMSYIVHYACNLSLSVHEPLKTRPGILSSLPLRERLPQVFCLIDLETYRCNLCGYCVIQRRNFQRRKSKAAAAFSFVERRWRRTVKSTMKCKHHH
YGYTGMTLRLLEAKTGGSLEGEFSESRRMNEMSFTPPQGSWPKPCS