; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0032258 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032258
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:28824376..28826836
RNA-Seq ExpressionLag0032258
SyntenyLag0032258
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-1065.15Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1454.13Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEDLIKTMTKIRA-FKCKSSLS-----QEPKLHDAPS
        +SMA  +EEN+C  ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E+        R   + K  LS     +EPKLH APS
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEDLIKTMTKIRA-FKCKSSLS-----QEPKLHDAPS

Query:  PHELKSSKV
        P ELKSS +
Subjt:  PHELKSSKV

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]9.7e-1455.14Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDE----DLIKTMTKIRAFKCKSSL---SQEPKLHDAP
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E    D I +    R  K K S+   +++PKLH AP
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDE----DLIKTMTKIRAFKCKSSL---SQEPKLHDAP

Query:  SPHELKS
        SP ELKS
Subjt:  SPHELKS

TYK02147.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-0965.15Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED
        +SMA  EEENQC  S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF E+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED

TYK26726.1 hypothetical protein E5676_scaffold124G00100 [Cucumis melo var. makuwa]8.2e-1347.01Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEDLIKTMTKIRAFKC-KSSLS-----QEPKLHDAPSP
        MA  EEENQC  STS + SAF+RLS+ST KK R STS FD LK+ +D+ +R+M  L+ KL ++E+        R   C K  LS     +EPKLH APSP
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEDLIKTMTKIRAFKC-KSSLS-----QEPKLHDAPSP

Query:  HELKSSKVLRCIL---------LRC--SFSKFEG
         ELKS+K+   ++         L C  S SKFEG
Subjt:  HELKSSKVLRCIL---------LRC--SFSKFEG

TrEMBL top hitse value%identityAlignment
A0A5A7U974 Retrotransposon gag protein3.2e-1065.15Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED

A0A5A7UM99 Ty3-gypsy retrotransposon protein1.2e-1454.13Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEDLIKTMTKIRA-FKCKSSLS-----QEPKLHDAPS
        +SMA  +EEN+C  ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E+        R   + K  LS     +EPKLH APS
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEDLIKTMTKIRA-FKCKSSLS-----QEPKLHDAPS

Query:  PHELKSSKV
        P ELKSS +
Subjt:  PHELKSSKV

A0A5A7VHY3 Uncharacterized protein4.7e-1455.14Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDE----DLIKTMTKIRAFKCKSSL---SQEPKLHDAP
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E    D I +    R  K K S+   +++PKLH AP
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDE----DLIKTMTKIRAFKCKSSL---SQEPKLHDAP

Query:  SPHELKS
        SP ELKS
Subjt:  SPHELKS

A0A5D3BRW2 Retrotransposon gag protein7.0e-1065.15Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED
        +SMA  EEENQC  S STR  AF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ KLF E+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDED

A0A5D3DSN6 Uncharacterized protein4.0e-1347.01Show/hide
Query:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEDLIKTMTKIRAFKC-KSSLS-----QEPKLHDAPSP
        MA  EEENQC  STS + SAF+RLS+ST KK R STS FD LK+ +D+ +R+M  L+ KL ++E+        R   C K  LS     +EPKLH APSP
Subjt:  MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKL-FDEDLIKTMTKIRAFKC-KSSLS-----QEPKLHDAPSP

Query:  HELKSSKVLRCIL---------LRC--SFSKFEG
         ELKS+K+   ++         L C  S SKFEG
Subjt:  HELKSSKVLRCIL---------LRC--SFSKFEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGATCTGATCAAGACCATGACAAAGA
TAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGT
TGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGTTCCTTCTTTCCAAGGTCGAAGGTTCTCAC
TCGCTGCGTTGAAGTTCTTTCTCTCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCTTTCTGCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCA
AGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCATTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCAAATTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGG
TTCACGCACTTTGCAGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTGCTTCGCCGCAATTCCTT
CCTCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCTTTCTTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGGTTCTCACG
CGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCCACAGTTCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAATTCCTTCCTC
CAAGTTCGAAGGTTCACATGCGCTTCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCG
CATCGCCACAGTTCCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACATTTCATTCCTACGCGCATTGCCACAGGTTCACACGCGCATCGCCACAGTCCTTCCG
CGCATTGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCACATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCC
AAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCACCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGTGCAT
CGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAATTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATATCGCCACAGTTCCTTCCTCCAAG
TTCGAAGGTTCTCACGCGCATTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTGTTCGAAGGTT
CTCACGAGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTGTCACGCGCATCGCCACAGTTCCCCACAGTTCCTTCCTACGCGCATTGCCACAGGTTCACACGCGCA
TCGCCACAATTCCTTCCTCCAAGTTCGAATCCATGACCTTTAAATATGCAGCTTGGCTATTAAACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGATCTGATCAAGACCATGACAAAGA
TAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGT
TGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGTTCCTTCTTTCCAAGGTCGAAGGTTCTCAC
TCGCTGCGTTGAAGTTCTTTCTCTCCAAGTTCGAAGGTTCACGCACTTCGCTGTAGTTCTTTCTGCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCA
AGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCATTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCAAATTTGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGG
TTCACGCACTTTGCAGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTGCTTCGCCGCAATTCCTT
CCTCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCTTTCTTCACAATTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCAAGTTCGAAGGTTCTCACG
CGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCCACAGTTCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAATTCCTTCCTC
CAAGTTCGAAGGTTCACATGCGCTTCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCG
CATCGCCACAGTTCCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACATTTCATTCCTACGCGCATTGCCACAGGTTCACACGCGCATCGCCACAGTCCTTCCG
CGCATTGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCACATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCC
AAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCACCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGTGCAT
CGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAATTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATATCGCCACAGTTCCTTCCTCCAAG
TTCGAAGGTTCTCACGCGCATTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTGTTCGAAGGTT
CTCACGAGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTGTCACGCGCATCGCCACAGTTCCCCACAGTTCCTTCCTACGCGCATTGCCACAGGTTCACACGCGCA
TCGCCACAATTCCTTCCTCCAAGTTCGAATCCATGACCTTTAAATATGCAGCTTGGCTATTAAACCAATAG
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEDLIKTMTKIRAFKCKSSLSQEPKLHDAPSPHELKSSKVLRCILLR
CSFSKFEGSQLYNCYVVPPPSAKDLMCSFFPRSKVLTRCVEVLSLQVRRFTHFAVVLSANSKVLTRFAAVPSSKFEGSPLLQFILPSSKVLTSLRCIPSSKFEGSHVLRC
SSFSPRSKVLTRCVAVPSPNLKVLTRFAAIPSSKFEGSRTLQQFLLQIRRFSRASLQFLPPSSKVLTCFAAIPSSKFEGSHALRCSSFFTIRRFSRASLQFLPPSSKVLT
RIATVPSSKFEGSHALRHSSLPPSSKVLTRIATIPSSKFEGSHALRHSSPSSKFEGSHAHRHSSFLQVRRFSRASPQFPSSKFEGSHAHRHISFLRALPQVHTRIATVLP
RIATVPSSKFEGSHAHRHSSFLQVRRFTRASPQFLPPSSKVHTRIATVPSSKFEGSHAHHHSSFLQVRRFTRASPQFLPPSSKVHTRIATIPSSKFEGSHAHIATVPSSK
FEGSHAHSPQFLPPSSKVLTRIATVPLPPSSKVVRRFSRASPQFLPPSSKVVTRIATVPHSSFLRALPQVHTRIATIPSSKFESMTFKYAAWLLNQ