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Lag0032281 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032281
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:29469201..29469776
RNA-Seq ExpressionLag0032281
SyntenyLag0032281
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015385738.1 uncharacterized protein LOC107177034 [Citrus sinensis]5.3e-0822.43Show/hide
Query:  MEENIGTEDLEKAILVLWSLWNQRNQSI--------------------------QPNQDPDFKYLTRAINANIKEEKKRVSANL---------LSGLGWI
        M + +   D+E  + + W++W  RN+ +                          QP  DP+ KY ++               N+          +GLG +
Subjt:  MEENIGTEDLEKAILVLWSLWNQRNQSI--------------------------QPNQDPDFKYLTRAINANIKEEKKRVSANL---------LSGLGWI

Query:  LRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAP
        +RD +       +K    +  ++  E +A+  GL          V     F  I VESD   V+K+++  E   +E+ ++ +EI      F++I + H P
Subjt:  LRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAP

Query:  RGCNFFVHNLARIA
        R CN   H+LA++A
Subjt:  RGCNFFVHNLARIA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.5e-0725.45Show/hide
Query:  ENIGTEDLEKAILVLWSLWNQRNQSI---------------------QPNQDPDFK--------YLTRAINANIKEEKKRVSANL--------------L
        +  G E+  +++++ W +W  RN+SI                        +D + K        +L R I  N     K  ++N                
Subjt:  ENIGTEDLEKAILVLWSLWNQRNQSI---------------------QPNQDPDFK--------YLTRAINANIKEEKKRVSANL--------------L

Query:  SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDI
         G+GWILRD  G  I    + I +  +I   E+ AI EGL+++     R +Q +   P I +ESD++  I +LH + +D +E+ +L  EI       + +
Subjt:  SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDI

Query:  RFVHAPRGCNFFVHNLARIA
           H  R  N   H+LAR A
Subjt:  RFVHAPRGCNFFVHNLARIA

XP_024164491.1 uncharacterized protein LOC112171562 [Rosa chinensis]2.2e-0625.85Show/hide
Query:  NIGTEDLEKAILVLWSLWNQRN-----QSIQPNQD---------PDFKYLTRAINANIKEEKKR---------------VSANLLSGLGWILRDCTGSPI
        N+  E  EK ++++W LW  RN      S Q + D          +F+   +     I+   K                V+       G +LR  TGS I
Subjt:  NIGTEDLEKAILVLWSLWNQRN-----QSIQPNQD---------PDFKYLTRAINANIKEEKKR---------------VSANLLSGLGWILRDCTGSPI

Query:  CGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNFFVHN
           +K +    S +  E+ AI EGL  L TLR              +ESD +  I+ L   + +LSE++ L  +I       + ++   +PR CN   H 
Subjt:  CGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNFFVHN

Query:  LARIA
        LA +A
Subjt:  LARIA

XP_027109195.1 uncharacterized protein LOC113729068 [Coffea arabica]5.8e-0726.15Show/hide
Query:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT
        E++E   ++LW+LWN RN ++                       + N++P     T AI  ++  + KR     V AN          +SG+G ++RD  
Subjt:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT

Query:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF
        G+ + G  K+I   ++ ++ E  A    ++ L         +DL  P I +E D + V+KML   E D S    L  +I      F        PR  N 
Subjt:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF

Query:  FVHNLARIACCSSAFSGC
          H +A+ AC  S  +GC
Subjt:  FVHNLARIACCSSAFSGC

XP_027158404.1 uncharacterized protein LOC113760026 [Coffea eugenioides]5.8e-0726.15Show/hide
Query:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT
        E++E   ++LW+LWN RN ++                       + N++P     T AI  ++  + KR     V AN          +SG+G ++RD  
Subjt:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT

Query:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF
        G+ + G  K+I   ++ ++ E  A    ++ L         +DL  P I +E D + V+KML   E D S    L  +I      F        PR  N 
Subjt:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF

Query:  FVHNLARIACCSSAFSGC
          H +A+ AC  S  +GC
Subjt:  FVHNLARIACCSSAFSGC

TrEMBL top hitse value%identityAlignment
A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-0622.07Show/hide
Query:  MEENIGTEDLEKAILVLWSLWNQRNQSIQPNQDPDFKYLTRAINANIKEEKKRVSANL----------------------------------LSGLGWIL
        M +    EDL+  ++  W +WN RN  I   +   F  + + +   + E   +   +L                                    G+GWI+
Subjt:  MEENIGTEDLEKAILVLWSLWNQRNQSIQPNQDPDFKYLTRAINANIKEEKKRVSANL----------------------------------LSGLGWIL

Query:  RDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPR
        R   G  +  G + + +  ++K+ E  AILEGL++L  L             + +E+D+  V  +L+ + EDL++  ++  EI   +   E + F    R
Subjt:  RDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPR

Query:  GCNFFVHNLARIA
          N   H+LA+ A
Subjt:  GCNFFVHNLARIA

A0A6J1DSV1 uncharacterized protein LOC1110236087.4e-0825.45Show/hide
Query:  ENIGTEDLEKAILVLWSLWNQRNQSI---------------------QPNQDPDFK--------YLTRAINANIKEEKKRVSANL--------------L
        +  G E+  +++++ W +W  RN+SI                        +D + K        +L R I  N     K  ++N                
Subjt:  ENIGTEDLEKAILVLWSLWNQRNQSI---------------------QPNQDPDFK--------YLTRAINANIKEEKKRVSANL--------------L

Query:  SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDI
         G+GWILRD  G  I    + I +  +I   E+ AI EGL+++     R +Q +   P I +ESD++  I +LH + +D +E+ +L  EI       + +
Subjt:  SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDI

Query:  RFVHAPRGCNFFVHNLARIA
           H  R  N   H+LAR A
Subjt:  RFVHAPRGCNFFVHNLARIA

A0A6P6W2N9 uncharacterized protein LOC1137290682.8e-0726.15Show/hide
Query:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT
        E++E   ++LW+LWN RN ++                       + N++P     T AI  ++  + KR     V AN          +SG+G ++RD  
Subjt:  EDLEKAILVLWSLWNQRNQSI-----------------------QPNQDPDFKYLTRAINANIKEEKKR-----VSANL---------LSGLGWILRDCT

Query:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF
        G+ + G  K+I   ++ ++ E  A    ++ L         +DL  P I +E D + V+KML   E D S    L  +I      F        PR  N 
Subjt:  GSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNF

Query:  FVHNLARIACCSSAFSGC
          H +A+ AC  S  +GC
Subjt:  FVHNLARIACCSSAFSGC

A0A803MUM1 Uncharacterized protein1.9e-0826.7Show/hide
Query:  EDLEKAILVLWSLWNQRNQSIQPNQDPDFKYLTRAINANIKEEKKRVSANLL----SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLP
        E+  + +++ W +WN+RN                   AN    +  V   +L    S +G ++RD  G  +  G ++++ SW   + E KA++ GLK   
Subjt:  EDLEKAILVLWSLWNQRNQSIQPNQDPDFKYLTRAINANIKEEKKRVSANLL----SGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLP

Query:  TLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNFFVHNLARIA
             A+Q ++K   + VESD   ++K+++G  +D S +  LA EI     +F+ I F H  R  N   H +A ++
Subjt:  TLRGRAVQVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNFFVHNLARIA

M5WQP0 RNase H domain-containing protein (Fragment)3.1e-0632.84Show/hide
Query:  EKKRVSANLLSGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLK---FPTITVESDAVGVIKMLHGEEEDLSEVAFLA
        +KK+    +  G GW +RD TG  I  G +      S  M EM AI            RAV    +   F  + VESD+   IKM+ GE   + EV  + 
Subjt:  EKKRVSANLLSGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAVQVDLK---FPTITVESDAVGVIKMLHGEEEDLSEVAFLA

Query:  AEISLAKSWFEDIRFVHAPRGCNFFVHNLARIAC
         ++  A   F+++ F+ APR CN   H +A  AC
Subjt:  AEISLAKSWFEDIRFVHAPRGCNFFVHNLARIAC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAAATATCGGAACTGAAGATCTGGAGAAAGCGATCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGCCGAATCAAGATCCCGATTTCAA
ATATCTAACAAGGGCGATTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTGAGCGGTCTCGGGTGGATTTTGCGTGACTGTACAGGATCTCCCA
TCTGTGGAGGATTGAAGAGGATCAACTCTAGCTGGTCCATCAAAATGCAGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACCTACTCTGCGAGGCCGAGCAGTC
CAAGTCGATTTGAAATTCCCTACTATTACAGTGGAATCAGACGCCGTCGGAGTGATCAAAATGCTCCACGGCGAAGAAGAGGATCTTTCGGAAGTGGCGTTCTTAGCGGC
CGAGATCTCTCTTGCGAAATCCTGGTTTGAGGATATCCGTTTTGTTCATGCTCCCCGTGGATGTAATTTTTTCGTTCATAATTTGGCGCGAATCGCGTGTTGTAGCTCCG
CCTTCTCAGGTTGTTGGGTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAAATATCGGAACTGAAGATCTGGAGAAAGCGATCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGCCGAATCAAGATCCCGATTTCAA
ATATCTAACAAGGGCGATTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTGAGCGGTCTCGGGTGGATTTTGCGTGACTGTACAGGATCTCCCA
TCTGTGGAGGATTGAAGAGGATCAACTCTAGCTGGTCCATCAAAATGCAGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACCTACTCTGCGAGGCCGAGCAGTC
CAAGTCGATTTGAAATTCCCTACTATTACAGTGGAATCAGACGCCGTCGGAGTGATCAAAATGCTCCACGGCGAAGAAGAGGATCTTTCGGAAGTGGCGTTCTTAGCGGC
CGAGATCTCTCTTGCGAAATCCTGGTTTGAGGATATCCGTTTTGTTCATGCTCCCCGTGGATGTAATTTTTTCGTTCATAATTTGGCGCGAATCGCGTGTTGTAGCTCCG
CCTTCTCAGGTTGTTGGGTTCATTAA
Protein sequenceShow/hide protein sequence
MEENIGTEDLEKAILVLWSLWNQRNQSIQPNQDPDFKYLTRAINANIKEEKKRVSANLLSGLGWILRDCTGSPICGGLKRINSSWSIKMQEMKAILEGLKSLPTLRGRAV
QVDLKFPTITVESDAVGVIKMLHGEEEDLSEVAFLAAEISLAKSWFEDIRFVHAPRGCNFFVHNLARIACCSSAFSGCWVH