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Lag0032311 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032311
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr11:30248420..30249340
RNA-Seq ExpressionLag0032311
SyntenyLag0032311
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054570.1 uncharacterized protein E6C27_scaffold24G003640 [Cucumis melo var. makuwa]6.0e-1341.18Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSPT    NYS S Q  G+S  +   Q+ A+N W     D IPM+Y + LPQLL+ + +        QP YP+W   +   EYH G VG+S 
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+K  WL
Subjt:  GICLLLKFEVQGLIKAEWL

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]3.2e-1442.86Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSP     NYS S Q  G+S  +   Q+ A+N W     D IPM+Y +LLPQLL+ + +        QP YP+W   +   EYH G VG+ST
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+KA WL
Subjt:  GICLLLKFEVQGLIKAEWL

KAA0060308.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.4e-1443.7Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSPT    NYS S Q  G+S  +   Q+ A+N W     D IPM+Y +LLPQLL+ + +        QP YP+W   +   EYH   VG+ST
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+KAEWL
Subjt:  GICLLLKFEVQGLIKAEWL

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]7.9e-1341.23Show/hide
Query:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL
        + +SSP     N+S S Q  GQS      Q+  +N W   + D IPM+Y +LLPQL++ + +        QP YP+W   +   EYH GAVG+ST  C  
Subjt:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL

Query:  LKFEVQGLIKAEWL
        LK +VQ L+KA WL
Subjt:  LKFEVQGLIKAEWL

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]7.9e-1341.23Show/hide
Query:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL
        + +SSP     N+S S Q  GQS      Q+  +N W   + D IPM+Y +LLPQL++ + +        QP YP+W   +   EYH GAVG+ST  C  
Subjt:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL

Query:  LKFEVQGLIKAEWL
        LK +VQ L+KA WL
Subjt:  LKFEVQGLIKAEWL

TrEMBL top hitse value%identityAlignment
A0A5A7TUT4 Uncharacterized protein3.8e-1341.23Show/hide
Query:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL
        + +SSP     N+S S Q  GQS      Q+  +N W   + D IPM+Y +LLPQL++ + +        QP YP+W   +   EYH GAVG+ST  C  
Subjt:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL

Query:  LKFEVQGLIKAEWL
        LK +VQ L+KA WL
Subjt:  LKFEVQGLIKAEWL

A0A5A7ULI2 Retrotrans_gag domain-containing protein1.5e-1442.86Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSP     NYS S Q  G+S  +   Q+ A+N W     D IPM+Y +LLPQLL+ + +        QP YP+W   +   EYH G VG+ST
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+KA WL
Subjt:  GICLLLKFEVQGLIKAEWL

A0A5A7VAU5 Uncharacterized protein3.8e-1341.23Show/hide
Query:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL
        + +SSP     N+S S Q  GQS      Q+  +N W   + D IPM+Y +LLPQL++ + +        QP YP+W   +   EYH GAVG+ST  C  
Subjt:  SHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNSTGICLL

Query:  LKFEVQGLIKAEWL
        LK +VQ L+KA WL
Subjt:  LKFEVQGLIKAEWL

A0A5D3D9Y2 Uncharacterized protein2.9e-1341.18Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSPT    NYS S Q  G+S  +   Q+ A+N W     D IPM+Y + LPQLL+ + +        QP YP+W   +   EYH G VG+S 
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+K  WL
Subjt:  GICLLLKFEVQGLIKAEWL

A0A5D3DEF4 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein6.9e-1543.7Show/hide
Query:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST
        ST    H+SSPT    NYS S Q  G+S  +   Q+ A+N W     D IPM+Y +LLPQLL+ + +        QP YP+W   +   EYH   VG+ST
Subjt:  STHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLLPQLLEENLI--------QPLYPEWRSKHTS-EYHEGAVGNST

Query:  GICLLLKFEVQGLIKAEWL
          C  LK +VQ L+KAEWL
Subjt:  GICLLLKFEVQGLIKAEWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCAGGACCACTTGTTTAAAAAGCCACCTCATCGAATATTGTCAGAAGAGTTGGATTGTTCACATATTGCAGATGGAATGATGGATTGGGCAGATGCATCCAGAAA
GTCATATGAATACAATAGTAATATGGCACCAGGTTGCTTTGAATTTTCAACACACGGAAAAAGCCACATCTCATCACCGACATTTAAATTGGTGAACTACTCTCAGAGTC
CTCAGCAAAATGGACAAAGTCAATCAAATGTACCAAATCAACAAGGTGCAAAGAATATTTGGACAGTGGAGCAAATTGATTTCATTCCAATGACATACATTGATCTCTTG
CCACAATTGCTAGAGGAAAATCTCATACAACCTCTATATCCTGAGTGGAGATCCAAACACACAAGTGAGTACCATGAAGGGGCAGTGGGGAACTCTACAGGGATTTGTCT
CCTACTGAAATTTGAGGTGCAAGGTTTAATCAAAGCAGAATGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCAGGACCACTTGTTTAAAAAGCCACCTCATCGAATATTGTCAGAAGAGTTGGATTGTTCACATATTGCAGATGGAATGATGGATTGGGCAGATGCATCCAGAAA
GTCATATGAATACAATAGTAATATGGCACCAGGTTGCTTTGAATTTTCAACACACGGAAAAAGCCACATCTCATCACCGACATTTAAATTGGTGAACTACTCTCAGAGTC
CTCAGCAAAATGGACAAAGTCAATCAAATGTACCAAATCAACAAGGTGCAAAGAATATTTGGACAGTGGAGCAAATTGATTTCATTCCAATGACATACATTGATCTCTTG
CCACAATTGCTAGAGGAAAATCTCATACAACCTCTATATCCTGAGTGGAGATCCAAACACACAAGTGAGTACCATGAAGGGGCAGTGGGGAACTCTACAGGGATTTGTCT
CCTACTGAAATTTGAGGTGCAAGGTTTAATCAAAGCAGAATGGTTGTAG
Protein sequenceShow/hide protein sequence
MIQDHLFKKPPHRILSEELDCSHIADGMMDWADASRKSYEYNSNMAPGCFEFSTHGKSHISSPTFKLVNYSQSPQQNGQSQSNVPNQQGAKNIWTVEQIDFIPMTYIDLL
PQLLEENLIQPLYPEWRSKHTSEYHEGAVGNSTGICLLLKFEVQGLIKAEWL