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Lag0032315 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0032315
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein, putative, unclassified, expressed
Genome locationchr11:30331657..30334546
RNA-Seq ExpressionLag0032315
SyntenyLag0032315
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAS55787.1 hypothetical protein [Oryza sativa Japonica Group]9.0e-0541.67Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+ EDG+WD AK+   FL+ D + I  + ++ + EED I W  +    FSV+SAY L + L + N
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

AAX95313.1 hypothetical protein [Oryza sativa Japonica Group]5.3e-0538.89Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+  +GSWD  ++   FL  D++ IL + L+ ++EED + W  +    FS++SAY L  SL E +
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

CAE02147.1 OSJNBa0081G05.2 [Oryza sativa Japonica Group]9.0e-0541.67Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+ EDG+WD AK+   FL+ D + I  + ++ + EED I W  +    FSV+SAY L + L + N
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

EEC77095.1 hypothetical protein OsI_15508 [Oryza sativa Indica Group]9.0e-0541.67Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+ EDG+WD AK+   FL+ D + I  + ++ + EED I W  +    FSV+SAY L + L + N
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

KQK16103.2 hypothetical protein BRADI_1g26757v3 [Brachypodium distachyon]2.8e-0630Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEE--NLTAYVFLRRGSSA-------------
        RL+ VS LL +DGSW+M  +   FL  DIE+I+ +  + + EED + W  + +  FSV+SAY LG  L  E  NL A      GSS              
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEE--NLTAYVFLRRGSSA-------------

Query:  ISLFLFLFWRPMSASNPCRANNCLQD-GALKVC-----LDYQSSHSFVLQLEQSVSDDVRRSIRDIPDLKNFRSTRFERFRTLPDKVDDV
        +++F    W+    + P + N C +    ++ C      D  S H+ V            RS  DIPD    ++T  E F  +   +D++
Subjt:  ISLFLFLFWRPMSASNPCRANNCLQD-GALKVC-----LDYQSSHSFVLQLEQSVSDDVRRSIRDIPDLKNFRSTRFERFRTLPDKVDDV

TrEMBL top hitse value%identityAlignment
A0A0Q3GYN2 Uncharacterized protein1.4e-0630Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEE--NLTAYVFLRRGSSA-------------
        RL+ VS LL +DGSW+M  +   FL  DIE+I+ +  + + EED + W  + +  FSV+SAY LG  L  E  NL A      GSS              
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEE--NLTAYVFLRRGSSA-------------

Query:  ISLFLFLFWRPMSASNPCRANNCLQD-GALKVC-----LDYQSSHSFVLQLEQSVSDDVRRSIRDIPDLKNFRSTRFERFRTLPDKVDDV
        +++F    W+    + P + N C +    ++ C      D  S H+ V            RS  DIPD    ++T  E F  +   +D++
Subjt:  ISLFLFLFWRPMSASNPCRANNCLQD-GALKVC-----LDYQSSHSFVLQLEQSVSDDVRRSIRDIPDLKNFRSTRFERFRTLPDKVDDV

A0A803N073 Uncharacterized protein3.3e-0530.71Show/hide
Query:  VSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGV-------SLVEENLTAYVFLRRGSSAISLFLFLFWRPM
        VS ++ E+ SW++ +M+    Q+DIE IL +PL     +D +YW       FSVKSAY LG+       + V ++L  +++   G   I  FL   WR  
Subjt:  VSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGV-------SLVEENLTAYVFLRRGSSAISLFLFLFWRPM

Query:  SASNPCR----ANNCLQDGALKVCLDY
        S+S          + +++G+ + C  Y
Subjt:  SASNPCR----ANNCLQDGALKVCLDY

Q2R5G8 Uncharacterized protein2.6e-0538.89Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+  +GSWD  ++   FL  D++ IL + L+ ++EED + W  +    FS++SAY L  SL E +
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

Q53JP3 Retrotransposon protein, putative, unclassified, expressed2.6e-0538.89Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+  +GSWD  ++   FL  D++ IL + L+ ++EED + W  +    FS++SAY L  SL E +
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

Q75M12 Reverse transcriptase domain-containing protein4.4e-0541.67Show/hide
Query:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN
        RL+ VS L+ EDG+WD AK+   FL+ D + I  + ++ + EED I W  +    FSV+SAY L + L + N
Subjt:  RLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTTCAAGATGAGTTGCGATTGGAGACGGTGTCCTCGTTGCTCTTGGAGGATGGGTCCTGGGATATGGCGAAGATGCAATGGGGCTTTCTGCAGGATGATATTGA
GCATATCTTGGCCATGCCATTAAACGGTCAAAGAGAGGAAGATGAGATATATTGGGCACTCAATGGTAAGAGGCACTTTTCTGTGAAAAGTGCTTATGATCTTGGGGTGA
GTTTAGTCGAGGAGAATTTGACGGCTTATGTATTCCTTCGTCGTGGTTCTTCAGCGATCTCCCTTTTCCTCTTTCTTTTCTGGCGGCCAATGTCTGCTAGCAACCCGTGC
AGAGCGAATAATTGTCTTCAGGACGGCGCTTTGAAAGTGTGCCTCGACTACCAATCATCACATTCTTTTGTTTTACAGCTTGAACAAAGTGTTTCAGACGACGTTCGACG
CTCGATCCGCGATATCCCCGACCTGAAAAACTTCAGATCTACGAGGTTTGAACGTTTTCGAACACTTCCTGACAAGGTCGACGACGTTTTCAAGCTCAACAACTTCAGAT
CTCGCATGGGTCTCGCGTGGGTGATCGTTTCAAAGGTTAGATCTCACGTGGGTGTCCGTTTCAGAGGCATCTTCTCGTTAGATCGTGTGGGTCTTCATTTCAAACCCACT
GAAATTGAGAACCGGAGAAGAAGATCGGAGATGGAGAACCCGCCAGAGAAGAAGATCGGAGATGGCGTGTTAGCTCGTGTGGGTCTTTGTTTTAAACCCACTGAAATGGA
GAACCGAAGAAGACGATCGGAGATGGAAAATCCGCCGGAGAAGAAGATCGGAGATGGCGCGTTAGCTCATGTGGGTCTTCGTTTCAAACCCACTGCAATGGAGAACCGGA
GAAGACGATCGGAGATGGAGAATCCACCGGAGAAGAAGATCGGAGATGGCAAACGGCTGCTCCGCGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTTCAAGATGAGTTGCGATTGGAGACGGTGTCCTCGTTGCTCTTGGAGGATGGGTCCTGGGATATGGCGAAGATGCAATGGGGCTTTCTGCAGGATGATATTGA
GCATATCTTGGCCATGCCATTAAACGGTCAAAGAGAGGAAGATGAGATATATTGGGCACTCAATGGTAAGAGGCACTTTTCTGTGAAAAGTGCTTATGATCTTGGGGTGA
GTTTAGTCGAGGAGAATTTGACGGCTTATGTATTCCTTCGTCGTGGTTCTTCAGCGATCTCCCTTTTCCTCTTTCTTTTCTGGCGGCCAATGTCTGCTAGCAACCCGTGC
AGAGCGAATAATTGTCTTCAGGACGGCGCTTTGAAAGTGTGCCTCGACTACCAATCATCACATTCTTTTGTTTTACAGCTTGAACAAAGTGTTTCAGACGACGTTCGACG
CTCGATCCGCGATATCCCCGACCTGAAAAACTTCAGATCTACGAGGTTTGAACGTTTTCGAACACTTCCTGACAAGGTCGACGACGTTTTCAAGCTCAACAACTTCAGAT
CTCGCATGGGTCTCGCGTGGGTGATCGTTTCAAAGGTTAGATCTCACGTGGGTGTCCGTTTCAGAGGCATCTTCTCGTTAGATCGTGTGGGTCTTCATTTCAAACCCACT
GAAATTGAGAACCGGAGAAGAAGATCGGAGATGGAGAACCCGCCAGAGAAGAAGATCGGAGATGGCGTGTTAGCTCGTGTGGGTCTTTGTTTTAAACCCACTGAAATGGA
GAACCGAAGAAGACGATCGGAGATGGAAAATCCGCCGGAGAAGAAGATCGGAGATGGCGCGTTAGCTCATGTGGGTCTTCGTTTCAAACCCACTGCAATGGAGAACCGGA
GAAGACGATCGGAGATGGAGAATCCACCGGAGAAGAAGATCGGAGATGGCAAACGGCTGCTCCGCGCGTAG
Protein sequenceShow/hide protein sequence
MGVQDELRLETVSSLLLEDGSWDMAKMQWGFLQDDIEHILAMPLNGQREEDEIYWALNGKRHFSVKSAYDLGVSLVEENLTAYVFLRRGSSAISLFLFLFWRPMSASNPC
RANNCLQDGALKVCLDYQSSHSFVLQLEQSVSDDVRRSIRDIPDLKNFRSTRFERFRTLPDKVDDVFKLNNFRSRMGLAWVIVSKVRSHVGVRFRGIFSLDRVGLHFKPT
EIENRRRRSEMENPPEKKIGDGVLARVGLCFKPTEMENRRRRSEMENPPEKKIGDGALAHVGLRFKPTAMENRRRRSEMENPPEKKIGDGKRLLRA